Gardnerella vaginalis HMP9231: HMPREF9231_0200
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Entry
HMPREF9231_0200 CDS
T01939
Symbol
nth
Name
(GenBank) endonuclease III
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
gvh
Gardnerella vaginalis HMP9231
Pathway
gvh03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
gvh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HMPREF9231_0200 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gvh03400
]
HMPREF9231_0200 (nth)
Enzymes [BR:
gvh01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
HMPREF9231_0200 (nth)
DNA repair and recombination proteins [BR:
gvh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
HMPREF9231_0200 (nth)
Prokaryotic type
HMPREF9231_0200 (nth)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
EndIII_4Fe-2S
RecR_HhH
HHH_5
IMS_HHH
INTS15
HHH_8
Motif
Other DBs
NCBI-ProteinID:
AEF30828
LinkDB
All DBs
Position
226998..227699
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AA seq
233 aa
AA seq
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MVKLQSVNSSQESSSNSRKSKKIARMSEEYRILCEEIPNPKCALNFTNPFELLIATVLSA
QTTDRRVNIVTEQLFRTYPTPKDLARAPIYKVQEIIHQLGFYRVKSQHIIELSQKLMDDF
NGVVPNNMDDLTKLPGVGRKTANVVLGNAFGIPGFPVDTHVMRVTSRLRWRSDWKIAKSD
PIKVEREITSYFPPEEWTNLSHRLILHGRKICTARNPHCADCPLRFLCPSVSL
NT seq
702 nt
NT seq
+upstream
nt +downstream
nt
ttggttaaattacaaagcgtgaatagtagtcaagaatcatcttccaattctagaaaatct
aaaaaaattgctaggatgagtgaagagtataggattttatgcgaagaaataccgaatcca
aagtgtgcattaaattttacaaatccatttgaactactaatagccactgttcttagcgca
caaaccactgatagacgtgtaaatattgtaacggaacaactttttagaacttatcctacg
ccaaaagatttagcgcgcgcaccaatatataaggtacaagagatcatccatcaacttgga
ttttatagagtaaaatcgcagcatattatagagctttcgcaaaaacttatggacgatttc
aatggtgtagttccaaataatatggatgatcttacaaaacttccaggtgtaggaagaaaa
acagcaaacgttgtattgggcaatgcttttggtatcccagggtttccagtagatacccac
gttatgcgtgtgacgtcaaggcttagatggagaagcgattggaaaatagctaagtcagat
cctataaaagttgagcgtgaaattacatcttattttccgccagaagaatggactaatttg
tctcaccgccttattcttcatggtagaaaaatatgtacagctaggaatccgcattgtgct
gactgccctctaagatttctgtgcccatctgtttcgctgtag
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