Gardnerella vaginalis HMP9231: HMPREF9231_0737
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Entry
HMPREF9231_0737 CDS
T01939
Symbol
ligA
Name
(GenBank) DNA ligase (NAD+)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gvh
Gardnerella vaginalis HMP9231
Pathway
gvh03030
DNA replication
gvh03410
Base excision repair
gvh03420
Nucleotide excision repair
gvh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gvh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HMPREF9231_0737 (ligA)
03410 Base excision repair
HMPREF9231_0737 (ligA)
03420 Nucleotide excision repair
HMPREF9231_0737 (ligA)
03430 Mismatch repair
HMPREF9231_0737 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gvh03032
]
HMPREF9231_0737 (ligA)
03400 DNA repair and recombination proteins [BR:
gvh03400
]
HMPREF9231_0737 (ligA)
Enzymes [BR:
gvh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HMPREF9231_0737 (ligA)
DNA replication proteins [BR:
gvh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HMPREF9231_0737 (ligA)
DNA repair and recombination proteins [BR:
gvh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HMPREF9231_0737 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HMPREF9231_0737 (ligA)
MMR (mismatch excision repair)
DNA ligase
HMPREF9231_0737 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HMPREF9231_0737 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
PTCB-BRCT
BRCT_2
HHH_3
Motif
Other DBs
NCBI-ProteinID:
AEF31007
LinkDB
All DBs
Position
879715..882597
Genome browser
AA seq
960 aa
AA seq
DB search
MIAYNSDKSSHAVGEQLSLFDDFDDSLNTDKSSVNNDSLSSSISTVDNQNQNVHEPGENN
TSNTSHEFSSTTDFNDWISKLEPTDVDAIALSKLEPSLLTSEQAARLWAKLAAWAQSDQI
AYYVDDSPSSSDAAYDTRMRVLSSLESTFPILDTPQSPTHRVGGTFSNDFASVKHPSRMM
SLDDVFSLEELKSWYDSIIRDLKWPQNKPLPMTCEVKIDGLALNLIYRNGTLEQGLTRGD
GVTGEDISLNVRTIEEIPTQLKCENSDDIPEFVEIRGEVFMKWADFRKLNIEQEDLGKPA
FANPRNAAAGSLRQKDPRITATRRLSFIAHGLGDLKWKDSVKNDSEHKSHKQTSFNQSDA
YELYKKWGIPVSPYTRKVTSFEQIEDMIEYYGEHRNSIIHALDGIVVKVDDRALQRELGS
TSRAPRWAIAYKYPPEEVNTVLKDIVVQVGRTGRVTPVAVLDPVTVAGSTISRTTLHNPY
EVEHKGVLIGDTVVVRKAGDVIPELVGPVLKYRDGNESKLRKFVMPEYCPSCGSKLAPAK
EGDKDIRCPNVENCPAQLTERIINLASRHAFDIENLGESSALALTNPEDSRPTTAEVYHP
DIDKIVIQRGSSLQPTIPESVFDLPKSQEPVIRSEADIFNITAADLRNIKVWKEIPLVEE
WKELGKDGKLKKRTKKIGGSGLWRQVSAFWTRPLEATRRKSNDDSNSDELKESLNPDYPI
FEVPSDAYVIRLVEKKIRKNNVLQTVSVPEYTRPSETTRAMLEEIVQKGKSATLWRVLVA
LSIRRLGPPTARLIAARFGSIENISKASVEDLTQIDGVGPEIAQAVYDWFEKSKNPQDWR
SEVLRKWNEAGVVGSSDSSNADSIEQTLSGKTVVVTGSLEGFTRDSAKEAISSRGGKAAS
SVSKKTYCVIVGENAGSKATKAEELGIPMLDENQFKILLNTGSIESALDSKYELDFKNES
NT seq
2883 nt
NT seq
+upstream
nt +downstream
nt
atgattgcgtataatagcgataagtcgtcacacgcagttggagaacaattatctcttttc
gacgattttgatgattcgctaaatactgataaatcaagtgttaacaacgattcattatct
tcaagcattagcacagtcgataatcaaaaccaaaatgttcatgagccaggcgagaacaat
acatctaacacatcacacgagtttagttcaactacagattttaatgattggatttctaaa
ttagagccaacagatgtagacgctattgcattatctaagctagaaccttcacttttaaca
agcgagcaagctgctagattatgggcaaaattagctgcttgggctcaatcagatcagata
gcttattatgttgatgattcaccaagtagttctgacgctgcttatgacacaagaatgcga
gttttaagctcactagaatctacattcccaatattagatacgcctcaatcaccaacacat
agagttggtggaactttttcgaacgattttgcgtcagttaaacatccatcaagaatgatg
agtttagatgatgtattctcattagaagagctaaaatcttggtacgatagcattattcgc
gatttaaaatggccccaaaataagccattgccaatgacatgcgaagtaaaaatcgatgga
cttgcgttaaatctcatatacagaaatggaactttggaacaaggactaactcgaggagat
ggcgttactggagaagacatatctctgaatgtaagaacaatcgaagaaataccgactcag
cttaaatgcgaaaattcagacgatattccagaatttgtggaaattcgtggtgaagttttt
atgaaatgggcggattttagaaagcttaatattgagcaagaagatttaggaaagcctgct
tttgctaatccaagaaacgctgctgcagggtctttaagacaaaaggatcctagaatcact
gcaacaagaagattaagctttatagcgcatggattaggtgatttaaagtggaaagattca
gtaaaaaatgattctgagcataaatcacataagcaaacatcgtttaatcagtcggacgca
tacgagctgtataaaaaatgggggatacccgtatctccttatactcgcaaagttacgtct
tttgaacaaatagaagatatgattgaatactatggagaacacagaaactctattattcat
gccttagatggaattgtagttaaagtagacgatcgtgctttgcaaagagaactagggtct
acatctagagcaccaagatgggcaattgcgtacaagtatcctccagaagaagtaaatact
gttcttaaagacattgttgttcaagtaggaagaacaggtagagtcactcctgttgctgtt
ttggacccagtaactgttgcaggatctacaatatcgcgcacaacattgcataatccttac
gaagttgagcataaaggtgtgcttataggcgatactgttgttgttcgtaaagctggcgat
gttataccagaattagttggtccagtactaaagtatagggatggaaatgaaagcaaatta
cgcaaatttgttatgccagagtattgcccatcatgcggatctaagcttgcacctgctaaa
gagggagacaaggatattcgttgtccaaatgtagaaaactgcccagcacaattaacagag
agaataattaatcttgcatcgaggcacgcattcgacattgaaaatcttggagaatcttct
gcactagctttaacaaatccagaagattctagacctacaactgcagaggtctatcatcct
gatattgacaaaatagtaattcagcgcggatcttctttgcaaccaactattccagaatct
gtgtttgatcttccaaaatctcaagagcctgttataagaagcgaagcggatatttttaac
attactgcagccgatttgcgaaatattaaagtttggaaagaaatacctcttgttgaagaa
tggaaagaattaggaaaagacggaaaattaaagaaaagaactaaaaaaataggcggatct
ggattgtggagacaggtttctgcattctggactagacctttagaagctacaagaagaaaa
tccaatgatgattccaacagtgatgagcttaaggaatctttaaatccagattacccaata
tttgaagttccttctgacgcttatgtaataaggttagttgaaaagaaaattcgtaaaaat
aatgttcttcaaacagtgagtgttcctgaatacactcgtccaagcgaaacaacaagagca
atgttagaagaaatagttcaaaagggtaagtctgcaacactttggcgtgtgctagtggct
ttgtctattcgtagacttggtccgcctacagcaagactaatagcggcaagatttggttca
attgagaatatttctaaagcatctgttgaagatttaacacaaattgatggagttggtcca
gaaattgctcaagctgtatacgattggtttgaaaaatcgaagaatcctcaagattggcgt
agtgaagttttacgtaaatggaatgaagccggagtagttggatcttctgactcttctaat
gcggacagtatcgaacagactcttagtggcaaaacggttgttgttacaggatcattagaa
ggctttaccagagattcagctaaagaagctatttcttctaggggaggaaaagcagcctct
tctgttagcaaaaagacgtattgcgttattgtaggagaaaatgctggttctaaagccact
aaagcagaagaacttggtatacctatgctagatgagaatcaatttaagattttgcttaat
actggcagtattgaatctgctctagatagcaaatacgaacttgattttaagaacgaatcg
taa
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