Galeopterus variegatus (Sunda flying lemur): 103587645
Help
Entry
103587645 CDS
T08727
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
gvr
Galeopterus variegatus (Sunda flying lemur)
Brite
KEGG Orthology (KO) [BR:
gvr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gvr03036
]
103587645 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
gvr03400
]
103587645 (SMCHD1)
Chromosome and associated proteins [BR:
gvr03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
103587645 (SMCHD1)
DNA repair and recombination proteins [BR:
gvr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
103587645 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
103587645
NCBI-ProteinID:
XP_008567385
LinkDB
All DBs
Position
Unknown
AA seq
2005 aa
AA seq
DB search
MAAAGGDGPGGPSVGTEKDREGDGFRTVYLFDRREKESELGDRALQVGERSDYAGFRASV
CQTLGISPEEKFVITTTSRKEITCDNFDETVKDGVTLYLLQSVNQLLLTATKERIDFLPH
YDTLVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNVGIRRIQIKLLFDETQGKPAV
AVIDNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGGK
QAVFFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKESIYSGYIRNRKPSDSVHITN
DDERFLHSLIIEEKEKDSFTAVIITGVQPEHIQYLKNYFHLWTRQLAHIYHYYIHGPKGN
EIRTSKEVGPFNNIDIEISMFEKGKAPKIINLREIQDDMQTLYINTAADSFEFKAHVEGD
GVVEGIIRYHPFLYDRETYPDDPCFPSKLKDEDDDDDCCILEKAARGKRPIFECFWNGRL
IPYTSVEDFDWCTPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNT
LFTRILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTLFKGIVTRSDLPSKKQGPWATYA
AIEWDGKIYKAGQLVKTIKTLPLFYGSIVRFFLYGDHDGEVYATGGEVQIAMEPQALYDE
IKTVPIAKLDRTVAEKAVKKYVEDEMARLPDRLSVTWPEGDELLPNEIRLAGTPIGALRI
EILNKKGEAMQKLPGTSHGGSKKLLVELKVILHSSNGNKEIISHISQHGGKWPYWFKKME
NIQKLGNYTLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPEKFSFGLLDLPFRVGVP
FNIPLEFQDEFGHTSQLVTDIQPVLEASGLSLHYEEITKGPNSVIQGVTVKGPVNSCQGK
NYNLKVILPGLKEDSQILKIRLLPGPPHRLKVKPDSEILVIENGTAFPFQVEVLDESDNI
TAQPKLIVHCKFLGAPNLPVYVVDCSSSGTSILTGSAIQVQNIKKDQMLKARIEIPSCKD
VAPVEKTIKLLPSSHVARLQIFSIEGQKAIQIKHQDEVNWIAGDIMHNLIFQMYDEGERE
INVTSALAEKIKVNWTPEINKEHLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFT
VRPLPDEPKHLKCELRGGKTVQMGQELQGEIVIIVTDQYGNQIQAFSPSSLSALSIAGVG
LDSSNLKTTFQENTQSISVRGIRFIPCPPGNKDLCFTWREFSDFIRVQLISGPPAKLLLI
DWPELKESIPVINGRELQNPLTVQLCDQWDNPAPVPHVKISLIKASNLKLTPSNQQHKTD
EKGRANLGVFNVFAPRGEHVMQVKAIYNKSTIEGPIIKLMILPDPEKPIRLNVKYDRDAS
FLAGGLFTDFMISVISEDDSIIKNINPARISMKMWKLSSSGNRPPANAETFSCNKVKDND
KEDGCFYFRDKVIPNKVGTYCILFGFMMDKANILNSEQVIVDVLPNHPVKLVPEIQPATP
AVSNVRSVASRTLVRDLCLNVMDEYSNHTGIDLVGTVTATIKGSNEEDTDTPLFTGKVRT
LEFPFVNGSAEITSLVLAENSPGRDSTEYFIIFEPRLSPLSRTLEPYILPFMFYNDVKKQ
QQMVALTKEKDQLSKSIIMYRNLFEANKQLVDEMKCQVEEAKLKEAHLRNELKARNIDFP
TRQQMPHIEALLKRKISEQEELKKKPRRSCTLPNYTKGSGDVLGKIAHLAQIEDDRAAMV
ISWHLASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYRKTLPDWKRPLPHFRNGKSY
FKPIGDPVFARDLLTFPDNIEHCETVFGMLLGDTIILDNLDAANHYRKEVVKITHCPTLL
TRDGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPVPKQCLMLGEQIELLQQYRTAVHKLG
SVNEDLNGQIEYLHTPDMKKKKQELDEHEKNLKLIEQKLGMTPTRKCNDSLRHSTKVEVT
DCPVPPKRMRREATRQNRIITKTDV
NT seq
6018 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggcgggaggcgacgggcccggcgggccctccgtggggactgagaaggaccgg
gaaggcgacggcttcagaactgtgtacttgtttgaccggcgcgagaaggaatccgagctc
ggggatcgggcgctgcaggtcggggagcgctcggactacgcggggttccgcgcctccgtg
tgtcagacacttggcatttcacctgaagagaaatttgttattactacaacaagtaggaaa
gaaattacctgtgataattttgatgaaactgttaaagatggagtcactctatacttgcta
cagtcagttaatcagttactattaacagctacaaaagaacgaattgacttcctacctcac
tatgacacactggttaaaagtggcatgtatgaatattatgcaagcgaaggacaaaatcct
ttaccatttgctcttgcggaattaattgacaattcattgtctgctacatctcgtaacgtt
ggtattagaagaatacagatcaagttgctttttgatgaaacacaaggaaaacctgctgtt
gcagtgatagataacggaagaggaatgacctctaaacagcttaacaactgggctgtgtat
agattgtcaaagtttacaaggcaaggtgactttgaaagtgatcattcaggatatgttcgt
ccagtaccagtgccacgcagtttaaatagcgatatttcctattttggtgttgggggcaag
caggctgttttctttgttggacaatcagccagaatgataagcaaacctgcagattcccaa
gatgttcatgagcttgtactttctaaagaagattttgagaagaaggagaaaaataaagag
tcaatatatagtggatatattagaaacagaaagccatctgattctgttcacattacaaat
gatgatgaaagatttctacatagtcttatcatagaggagaaggaaaaagatagctttact
gctgtgattatcacaggtgtacaaccagaacacatacagtacttgaaaaattatttccat
ctttggacacgacagttagcgcatatttaccattactatattcatggcccaaaaggaaat
gaaatacgtacatcaaaagaagttggacctttcaacaacattgatattgaaatttctatg
tttgaaaaagggaaggcacctaagattatcaacctaagggaaatacaagacgacatgcag
acgttgtatataaacacagcagctgatagttttgagttcaaggctcatgttgaaggagac
ggtgtagtggaagggattatccgatatcatcctttcttatatgatagagaaacttacccc
gatgatccatgctttccatcaaaattaaaagatgaagatgatgatgatgattgttgcata
cttgagaaagcagcaagagggaaaaggcctatttttgaatgtttttggaatggacggtta
ataccatatacatcagtagaagactttgactggtgtactcctcctaagaagagagggctt
gcaccaattgaatgctacaatagaatatctggtgcattattcactaatgacaaattccag
gtcagcacaaataaactgacttttatggatcttgagttaaaattgaaagataagaacacc
ctttttacaaggattttaaatggacaggagcagcgaatgaaaattgacagagaatttgct
ttatggctgaaggactgtcatgaaaaatatgacaaacaaataaaatttacactttttaaa
ggaatagttacacgttctgatcttccttctaaaaagcaaggcccttgggctacatacgca
gcaatagaatgggatggaaaaatatacaaagcaggacaactggtaaagacgatcaagaca
cttcccctcttctatggaagcatagtaagattttttctttatggtgatcatgatggtgaa
gtatatgctacaggaggagaagttcaaattgcaatggaacctcaggcactgtatgacgaa
ataaaaactgtgccaattgcaaagctcgataggacagttgctgagaaagctgttaaaaaa
tatgtagaagatgaaatggcaaggcttcctgatagattgtcagtaacttggcctgaggga
gatgaattattgccaaatgagattaggcttgctggaacccccattggtgcattaagaatt
gaaatattgaataaaaaaggtgaagcaatgcaaaagcttccaggaacaagtcatggaggg
tcaaagaaactcctggtggagctcaaagttatattacactcttcaaatgggaataaagaa
atcatttcacatattagtcaacatggaggaaaatggccatactggtttaaaaaaatggaa
aatattcaaaagttggggaattatacattgaaattacaagttgtattgaatgaaagtaat
gcagacacttatgcaggaagaccattaccatccaaagcaattaaattttctgttaaagag
ggtaagccagagaaattttcatttggtcttctggatcttccttttcgtgttggagttcca
tttaatattcctctggagtttcaggatgaatttggtcatactagtcaactagtaactgat
attcagccagttcttgaagcaagtggtttatctttacattatgaagaaataaccaaagga
ccaaattctgtaattcaaggtgttactgttaagggccctgtaaattcttgtcaaggcaag
aattataatctgaaggttattctgccgggtttaaaagaagactcacaaattttgaaaatt
agattactacctggtccccctcatcgattgaaagtgaaacctgattctgaaattttagtt
atagaaaatggaacagcttttccatttcaggtggaagttttagatgaatcagacaacata
acagcacaaccaaaattgattgttcattgtaagtttttaggtgctccaaaccttccagtc
tacgtcgtggattgcagtagttctggaacgagtattttaacaggatctgcaattcaagtt
cagaatattaaaaaagaccagatgcttaaagcaagaattgaaatccctagttgtaaagat
gtggcacctgtggagaagactattaagttgctgcccagtagtcatgttgcaagactacag
atattcagtatagaaggacaaaaggcaatccagatcaaacatcaggatgaggttaactgg
atagcaggcgatattatgcataatcttatttttcaaatgtatgatgaaggagaaagagaa
atcaatgtaacatcagctttagcagaaaaaattaaagttaattggactcctgagattaac
aaagaacatttgctacagggtctacttcctgatgtacaagtaccaacatctgtaaaagat
atgcgctattgccaggtttcattccaagatgatcatgtgtctttggaaagtgcatttaca
gtaagaccacttcctgatgaacctaaacacttaaaatgtgagctaagaggaggaaaaaca
gtacagatgggccaagagcttcaaggagaaatagttataatagttacagatcagtatgga
aatcagattcaagcattttcaccaagttctttatctgctttgtcaattgctggtgttgga
cttgatagctcaaatttgaaaactacttttcaggaaaacacacaaagtataagtgtaaga
ggcatcagatttattccatgtcctcctggaaataaggatctttgttttacttggcgtgag
ttttctgactttattcgagtgcagctaatttctgggcctccagccaaacttctccttata
gactggccagaactaaaggagtccattccagtgattaatggaagagaattacagaatcct
cttactgttcaactttgtgatcagtgggataatccagcaccggtaccacacgttaaaata
agtctcataaaagctagcaacttaaagctcacgccttcaaaccaacagcataaaacagat
gagaagggcagggctaatttgggagtgttcaatgtttttgcccctaggggagaacatgtt
atgcaggttaaagctatctataacaagagtacgatagaaggacctataattaagttaatg
attcttccagaccctgaaaaacccattcgtctcaatgttaaatatgacagagatgcttcc
tttttagcagggggtcttttcactgattttatgattagtgttatttctgaagatgacagt
atcattaaaaatattaatcccgcacgtatttccatgaaaatgtggaagctgtctagcagt
gggaaccgaccaccagcaaatgcagaaacatttagttgtaataaagtaaaagataatgac
aaggaagatggctgcttctatttcagggataaagtaattcctaacaaagtggggacatat
tgcatcctgtttggttttatgatggataaagcaaatattctcaacagtgaacaggttata
gttgatgttctacctaatcatcctgtgaagttagttcctgaaattcagccagctacccca
gctgtttctaatgttcgctcagttgccagcaggaccttggtcagagatttatgtctcaat
gtcatggatgaatatagcaatcatactggaattgatttggttggcactgtaacagctacc
attaaaggttctaatgaggaagatactgataccccactctttaccgggaaagttagaaca
cttgaatttccctttgtgaatggttcagctgaaatcacgagtctagtgctggctgaaaat
agtcctggaagggatagtactgaatattttattatatttgagccccggctgtcaccttta
tcaagaacattagaaccatatatcctaccatttatgttttacaatgatgtgaagaaacag
caacaaatggtagcacttaccaaagaaaaggaccaattatctaagtctattattatgtat
agaaatttatttgaagccaacaaacagcttgttgatgaaatgaaatgccaagttgaagaa
gcaaaattaaaagaagcccacttgcgcaatgaactaaaagcacgtaatattgactttcct
acaaggcaacagatgccacatattgaagcacttttgaaaagaaagatatctgaacaggaa
gaactaaagaagaaacctagaagatcatgtactcttccaaactatactaaaggcagtgga
gatgttttgggaaagattgcacatctagcacaaattgaagatgatagagctgcaatggtt
atttcttggcatctggcgagtgacatggactgtgtagtcaccctaaccactgatgctgca
cgtcgtatctatgatgaaacacaaggtcgtcagcaggtgttgccccttgattctatttat
aggaagactcttccagattggaaaagacctctacctcatttccgaaatggaaaatcgtat
tttaaaccaattggagatccagtctttgccagagatttgttaacgtttccagataatata
gaacattgtgaaacagtatttggtatgctgttaggagacaccattattttggataatctg
gatgcagccaatcattatagaaaagaggttgttaaaattacacactgtcctacactactg
accagagatggagatcgaattcgaagtaatggaaagtttggaggccttcagaataaagct
cctccaatggataaacttcggggaatggtatttggagctccagtaccaaaacaatgcctg
atgttaggggaacaaatagagcttcttcaacagtatcgtactgctgtgcacaagctgggt
agtgtgaatgaggaccttaacggtcaaatagagtaccttcacactcctgatatgaagaag
aaaaaacaagaacttgatgaacacgagaaaaatttgaaactaatagagcaaaaactaggt
atgactcccacacgtaagtgtaatgactcattgcgtcattcaacaaaggttgaggtaaca
gattgtccagttcctcctaaaagaatgagaagagaagctacaagacaaaataggattata
accaaaacagatgtgtga
DBGET
integrated database retrieval system
