Geobacillus sp. WCH70: GWCH70_0271
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Entry
GWCH70_0271 CDS
T00915
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gwc
Geobacillus sp. WCH70
Pathway
gwc03030
DNA replication
gwc03410
Base excision repair
gwc03420
Nucleotide excision repair
gwc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gwc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GWCH70_0271
03410 Base excision repair
GWCH70_0271
03420 Nucleotide excision repair
GWCH70_0271
03430 Mismatch repair
GWCH70_0271
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gwc03032
]
GWCH70_0271
03400 DNA repair and recombination proteins [BR:
gwc03400
]
GWCH70_0271
Enzymes [BR:
gwc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GWCH70_0271
DNA replication proteins [BR:
gwc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GWCH70_0271
DNA repair and recombination proteins [BR:
gwc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GWCH70_0271
NER (nucleotide excision repair)
GGR (global genome repair) factors
GWCH70_0271
MMR (mismatch excision repair)
DNA ligase
GWCH70_0271
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GWCH70_0271
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
Nlig-Ia
RNA_pol_A_CTD
HHH_3
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
ACS23200
UniProt:
C5D4J2
LinkDB
All DBs
Position
306821..308833
Genome browser
AA seq
670 aa
AA seq
DB search
MDRQAAMKRIEELRELLNKYNYEYYVLDRPSVPDAEYDRLMQELIALEEQYPDLKTKDSP
SQRVGGQALDAFQKVEHRTPMLSLANAFNEGDLRDFDRRVRQEVGDDVAYVCELKIDGLA
VSVRYEDGYFVQGATRGDGVTGEDITENLKTIRSLPLRLNEPVTLEARGEAYMPKASFER
LNEQRRNRGEELFANPRNAAAGSLRQLDPKIAASRHLDLFVYSLANAEELGIDSHSAALD
YLQQLGFKTNPERRRCANIDEVIQFVNEWHEKRSHLPYEIDGIVVKVDSFEQQKQLGATA
KSPRWAVAYKFPAEEVVTKLIGIELSVGRTGVVTPTAILEPVRVAGTTVQRATLHNEDFI
RQKDIRIGDSVIIKKAGDIIPEVVNVVPDRRTGEEVPFVMPTHCPECASELVRFDGEVAL
RCINPKCPAQIREGLIHFVSRQAMNIEGLGEKVISQLFREGLIHDVADLYRLTKEQLIRL
ERMGEKSATNLLRAIEASKQNSLERLLFGLGIRHVGAKAAKVLAEHFGTMDRLQTATKEE
LMAIHEIGEKMADSIVTYFAKPEVKELLNELRAYGVNMEYKGPKTPKPGDVHSYFAGKTV
VLTGKLESLSRNEAKEKIEQLGGKVTGSVSKNTDLVIAGADAGSKLAKAQQLNIEIWDEE
RFLQEIEQNK
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggaccgacaagctgcgatgaaacgaatcgaagagcttcgagagcttttaaataaatac
aattatgaatactatgttctggaccgtccgtctgtaccggatgcggaatatgatcggctg
atgcaagagctcatcgcattagaagaacaatatccggatttaaaaacgaaagactctccg
tcgcaacgcgtgggcgggcaggcgttagatgcgtttcaaaaagtggaacatcgcacgccg
atgctaagccttgcgaacgcgtttaacgaaggtgatttgcgcgattttgaccgccgtgtg
cgtcaagaagtcggcgatgatgtcgcctatgtgtgcgagctgaaaatcgatgggctggct
gtttccgtccgctacgaagacggctattttgtccaaggagcgacacgcggcgacggggtg
accggcgaagatattacggagaacttaaaaacgattcgttccttgccgcttcgtctgaac
gaacccgtgacattagaagcgcgcggcgaagcctacatgccgaaagcgtcgtttgagaga
ttgaacgaacagcgacgcaatcgcggggaagagctgtttgccaatccgcgcaacgccgcc
gcaggttctttgcgtcagttggatccgaaaatcgccgcatcgcgtcacctggatttattt
gtatacagtctcgccaacgcggaagaattaggaattgattctcatagcgcggcgctcgat
tatttgcaacagcttgggtttaaaacaaacccggaacgccgccgctgtgctaatatcgat
gaagtcattcaatttgtgaatgaatggcatgaaaaacgctcgcatctaccttatgaaatc
gatgggattgtagtgaaggtggattcatttgagcagcaaaaacaactaggtgcgaccgcg
aaaagtccgcgttgggccgttgcttataaattcccggctgaggaagtggtaacgaaactg
attggcatcgaattaagcgtcggacgcacaggagtcgttactccgacagcgattttagag
ccggtacgtgtagcaggtacaacggtacaacgcgccacccttcataatgaggattttatt
cgccagaaagatatccgcattggtgattcggtcatcatcaaaaaagcgggggatattatt
ccagaagtagtgaatgtcgtgccagaccggcggacgggagaagaagtgccgtttgtcatg
ccgacgcattgcccggaatgtgcaagtgaactagttcgcttcgatggtgaagtggcgctt
cgttgtattaatccgaaatgtccagcgcaaattcgcgaaggcttgattcatttcgtatca
cgtcaagcgatgaacatcgagggacttggcgaaaaggtcatctcccagctgttccgtgaa
ggtctcatccatgacgttgccgatctttatcgattgacgaaggaacagttaatccgttta
gaacgcatgggggaaaaatcggcaaccaatttactccgtgccattgaagcgtccaaacaa
aattcgctagaacgtcttctcttcggccttggcattcgccatgttggcgcaaaagcagcg
aaagtgttagcggaacattttggaacaatggaccgtctgcaaacagcgacaaaagaagaa
ctaatggcgattcacgagatcggcgaaaaaatggctgattcgattgtcacgtattttgcg
aaaccggaagtaaaagaacttctaaacgaactgcgcgcttacggtgtcaacatggaatac
aagggcccgaaaacgccaaaacctggcgatgttcattcatattttgcaggaaaaacagtt
gtattaacaggaaaactcgaatcattgtcgcgcaatgaggcaaaagaaaaaattgaacag
cttggcggcaaagtcactggcagtgtgagcaaaaatacagatttagtcattgccggagca
gatgcaggctcgaagcttgcgaaagcacagcagcttaacatcgagatttgggatgaagag
agatttcttcaagaaattgaacaaaataagtag
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integrated database retrieval system
