Georgenia yuyongxinii: FE374_12810
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Entry
FE374_12810 CDS
T07730
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gyu
Georgenia yuyongxinii
Pathway
gyu03030
DNA replication
gyu03410
Base excision repair
gyu03420
Nucleotide excision repair
gyu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gyu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FE374_12810 (ligA)
03410 Base excision repair
FE374_12810 (ligA)
03420 Nucleotide excision repair
FE374_12810 (ligA)
03430 Mismatch repair
FE374_12810 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gyu03032
]
FE374_12810 (ligA)
03400 DNA repair and recombination proteins [BR:
gyu03400
]
FE374_12810 (ligA)
Enzymes [BR:
gyu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FE374_12810 (ligA)
DNA replication proteins [BR:
gyu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FE374_12810 (ligA)
DNA repair and recombination proteins [BR:
gyu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FE374_12810 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FE374_12810 (ligA)
MMR (mismatch excision repair)
DNA ligase
FE374_12810 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FE374_12810 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
HHH
PTCB-BRCT
PGRL1_N
Sigma70_r3
Motif
Other DBs
NCBI-ProteinID:
QDC25378
LinkDB
All DBs
Position
complement(2800930..2803287)
Genome browser
AA seq
785 aa
AA seq
DB search
MGRVTDEIAATELQDTVAAVPEAADADARQRWTDLAEALEAAQFAYYVRDAPTISDAEYD
QLMRDLEALEEAHPDLRVPESPTQRVGGTFSTEFATVTHHEPMMSLDDVFSLEELREWAA
RVHAAAGRTDVAMTCELKIDGLAVNLLYEHGRLVRAATRGDGRTGEDVTLNVRTIASVPQ
QLAGKDHPASIEVRGEVFFPVAGFEELNASLVAAGKAPFANPRNSAAGSLRQKDPRVTAS
RPLDMIAHGVGAVRWDGITPPETLTTQFGLYEQLKAWGIPVSTHTRLVRSRAEAEEMIAH
YGEHRHTVAHEIDGIVIKVDDFALQRQMGATSRAPRWAAAYKYPPEEVNTKLLDIRVQVG
RTGRVTPYGVMEPVLVAGSTVAQATLHNAQEVVRKGVLIGDTVVLRKAGDVIPEIVAPVV
ELRDGSERAFVMPERCPSCGTPLAPAKEGDVDLRCPNARSCPAQLTERVAHIGSRGALDI
EALGYEAALALVYPEASRELVAAARALAGADGRTPTPEDLAAADAALPAPQRPVLTTEAG
LFDLAAEELRDVRVWREIKKDGVGTGTWEQRLFFWTTPTHRRDGTVNKPSKPTATTEVMI
AELDRAKDQPLWRVLVALSIRHVGPTAARALAVEYGSMEAMRAASVEELAAVDGVGPVIA
AALKAWFEEDWHREIVDSWTAAGVRMADERDASVERTLEGLTIVVTGSLEDFSRDSAKEA
VIVRGGKASGSVSKKTDFVVVGANAGTKEAKARELGRPILDEAGFVALLAGGPDAVADLV
EPDGE
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgggacgcgtgacagacgagattgccgccaccgagctccaggacaccgtcgcggcggtg
cccgaggccgcggacgccgacgcacgccagcgctggaccgacctcgccgaggccctcgag
gccgcgcagttcgcgtactacgtgcgggacgcgccgaccatctccgacgccgagtacgac
cagctcatgcgcgacctggaggcgctggaggaggcgcacccggacctgcgggtgcccgag
tcgcccacccagcgcgtcggtggcacgttctcgaccgagttcgccacggtcacccaccac
gagcccatgatgagcctggacgacgtcttctccctcgaggagctgcgcgagtgggccgcc
cgggtgcacgcggcggccggccgcaccgacgtggccatgacctgcgagctcaagatcgac
gggctcgcggtgaacctgctctacgagcacggccggctcgtacgcgccgcgacccgcggg
gacgggcgcaccggtgaggacgtcacgctcaacgtgcgcaccatcgcctccgtcccccag
cagctggcagggaaggaccacccggcgagcatcgaggtccgcggcgaggtgttcttcccg
gtcgcgggcttcgaggagctcaacgcctccctggtcgccgcgggcaaggcgccgttcgcg
aacccgcgcaactccgcggccggctcgctgcgccagaaggacccacgggtgaccgcctcc
cggccgctggacatgatcgcccacggggtgggcgcggtgcggtgggacggcatcaccccg
cccgagaccctgaccacccagttcggcctctacgagcagctcaaggcctggggcatcccg
gtctccacccacacccgcctggtccgctcccgcgccgaggcggaggagatgattgcccac
tacggcgagcaccggcacaccgtcgcgcacgagatcgacggcatcgtcatcaaggtcgac
gacttcgccctgcagcgccagatgggcgcgacctcacgggcaccgcgctgggcggcggcc
tacaagtacccccccgaggaggtcaacaccaagctgctcgacatccgggtgcaggtgggc
cgcacgggccgggtcacgccgtacggggtcatggaaccggtgctggtggccggctccacc
gtcgcccaggccaccttgcacaacgcccaggaggtggtccgcaagggtgtgctcatcggc
gacacggtggtcctgcgcaaggccggcgacgtcatcccggagatcgtcgcccccgtggtc
gagctgcgcgacggcagcgagcgggcgttcgtcatgcccgagcggtgcccctcgtgcggc
acgccgctcgcccccgccaaggagggcgacgtcgacctgcgctgccccaacgcccggtcc
tgcccggcccagctcaccgagcgggtggcccacatcggctcgcgcggcgcgctggacatc
gaggcgctcggctacgaggcagccctcgccctggtctaccccgaggcctcccgcgagctg
gtcgcggccgcccgcgcactcgccggcgccgacggccggacgcccacccccgaggacctc
gccgccgccgacgccgcactgcccgcgccccagcgccctgtgctcaccaccgaggccggc
ctgttcgacctcgccgccgaggagctgcgggacgtgcgggtgtggcgtgagatcaagaag
gacggcgtgggcaccggcacgtgggagcagcgcctgttcttctggaccacgcccacgcac
cggcgcgacggcaccgtcaacaagccctccaagcccaccgccaccaccgaggtgatgatc
gccgagctcgatcgggccaaggaccagcccctgtggcgggtcctggttgcgctgtcgatc
cggcacgtcggccccacggcggcgcgcgcgctcgcggtggagtacggctccatggaggcc
atgcgcgcggcgagcgtcgaggagcttgcggcggtcgacggcgtcggcccggtcatcgcc
gctgcgctgaaggcgtggttcgaggaggactggcaccgcgagatcgtggacagctggacg
gccgccggggtccgcatggccgacgagcgcgacgcgtccgtcgagcgcacgctcgagggc
ctcaccatcgtggtcaccgggtccctggaggacttcagccgcgactccgcgaaggaggcc
gtcatcgtccgcggcggcaaggcctccgggtcggtgtcgaagaagaccgacttcgtcgtg
gtcggcgcgaatgccggcaccaaggaggccaaggcccgtgagctgggtcggcccatcctc
gacgaggccgggttcgtcgcgctgctggccggtgggccggacgccgtcgccgacctggtg
gagcccgacggcgagtag
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