Halotalea alkalilenta: A5892_06860
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Entry
A5892_06860 CDS
T04333
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
haa
Halotalea alkalilenta
Pathway
haa03030
DNA replication
haa03410
Base excision repair
haa03420
Nucleotide excision repair
haa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
haa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A5892_06860 (ligA)
03410 Base excision repair
A5892_06860 (ligA)
03420 Nucleotide excision repair
A5892_06860 (ligA)
03430 Mismatch repair
A5892_06860 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
haa03032
]
A5892_06860 (ligA)
03400 DNA repair and recombination proteins [BR:
haa03400
]
A5892_06860 (ligA)
Enzymes [BR:
haa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
A5892_06860 (ligA)
DNA replication proteins [BR:
haa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A5892_06860 (ligA)
DNA repair and recombination proteins [BR:
haa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
A5892_06860 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A5892_06860 (ligA)
MMR (mismatch excision repair)
DNA ligase
A5892_06860 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A5892_06860 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
DNA_ligase_ZBD
BRCT
PTCB-BRCT
HHH
5_3_exonuc
RUBY_RBDX
DZR_2
zf-NADH-PPase
Motif
Other DBs
NCBI-ProteinID:
ANF57218
UniProt:
A0A172YDA2
LinkDB
All DBs
Position
1562692..1564746
Genome browser
AA seq
684 aa
AA seq
DB search
MSRAETSSEVVAEVNALRQQIEDANHRYYVENQAAIPDVEYDRMMRRLQTLELEHPECAS
ADSPTQRVGAKIAEGFPPVEHSVPMLSLDNAFDDDELRAFVKRAAERLERDAEALTFCCE
PKLDGLAVSLIYRDGRLDQGATRGDGRVGEGITSNLRTLRSIPLRLRGSDHPSLLEVRGE
VYMSRPGFERFNESARLEGGKVFANPRNAAAGSLRQLDPQIAAARPLEFCAYQVAQLEGA
EWEETHSAMMARLREWGFRTSPELAVAQGAEGIVAFCRGLGERRERLDYDIDGAVLKIDS
LRDQRELGFVSRAPRWAIAYKYPAQEQITQLKAVEFQVGRVGTLTPVAKLEPVQVAGVTV
SNATLHNMDEVERLGVRIGDYVIVRRAGDVIPQVVQVVIDRRPERTEEILMPEHCPICGA
EVERLEGEVAARCSGGLFCPAQRKEALKHFASRRAMDIDGLGEKLIDQLVERGMVETPAD
LFWLEAPTLAELPRMAEKSAANLIQALERARHTTLARFIYALGIREVGETTAATLARHFG
TLKALMAADAEALVQAPDVGPVVAEHVETFFAQAHNRETIDALIDAGVKWQEVEIEARPR
PLEGQTWVLTGSLEEMSRDQARDRLIGLGAKVSGSVSKKTRCVVAGPGAGSKLAKAEELG
VEVIDEQAFLARLVEFESGAGGDA
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
gtgagccgtgccgagacttcctccgaggtggtggctgaagtgaatgcgcttcgccagcag
atcgaagatgccaaccaccgttactacgtagagaaccaagccgcgattcccgatgtcgag
tacgaccggatgatgcgccggctgcaaaccctcgagctagagcatcccgaatgcgccagc
gccgattcgccgacccagcgggtcggcgccaagatcgccgaaggcttcccaccggtcgag
cacagcgtgccgatgctctcgttggacaatgctttcgatgacgatgagctgcgtgccttc
gtcaagcgtgccgccgagcgtctcgagcgtgatgccgaggcgttgaccttctgctgcgag
cccaagctcgacggccttgccgtttcactgatctatcgcgatggtcggctggaccagggc
gcgacccgcggagatggacgggtcggcgaggggatcaccagcaacctgcgcacgctgcgc
tcgattccattgcgcctgcgcggaagcgaccatccatcgctgctcgaagtgcgcggcgag
gtctatatgagccgcccgggcttcgagcggttcaacgaaagcgcacgcctggagggcggc
aaggtattcgccaatccgcgcaacgcagccgccggcagcctgcgccagcttgatccccag
atcgccgcggcgcggccgttggagttctgcgcctatcaggtcgcccagctcgagggagcc
gaatgggaagaaacccactcggcgatgatggcgcggctgcgcgagtggggtttccgcacc
agccccgagctcgccgtggcccagggtgccgagggcatcgtcgcattctgccgaggcctc
ggcgagcggcgcgagcggctcgactacgacatcgatggcgcggtgctcaagatcgattcg
ctgcgcgatcagcgcgagcttggtttcgtctcccgcgcgccgcgctgggcgatcgcgtat
aagtatcccgcccaggagcaaatcacccagctcaaggcggtggagttccaggtcgggcgg
gtcggcacgctcacgccggtggccaagctcgagccggtgcaggtcgccggggtcaccgtc
tccaatgcgacgctgcacaatatggatgaggtcgagcgcctcggcgtgcggatcggcgac
tatgtgatcgttcgccgcgcgggcgacgtgattccccaggtagtccaggtggtgatcgac
cggcgccctgagcggaccgaagagatcctgatgcccgagcactgcccgatatgcggtgcc
gaggtcgagagactcgaaggcgaggtcgccgcacgctgctccggcgggctgttctgtccc
gcccagcgcaaggaggcgttgaagcacttcgccagccgacgcgcgatggatatcgatggt
ctcggcgagaagctgatcgaccagctggtcgagcgcggtatggtcgagaccccggcggat
ctgttctggctcgaagccccgacccttgccgagctgccccgcatggccgagaagtccgcc
gccaatctgattcaggcgctcgagcgcgctcggcacaccacgctcgcccgtttcatctat
gcgctcggcatccgcgaggtcggcgaaaccaccgcagcgaccctggcgcgccatttcggc
acgctcaaggcgttgatggcggcggacgctgaggcgctggtccaggcgccggacgtcggc
ccggtggtcgccgagcacgtggagaccttcttcgcccaggcccataaccgcgagaccatc
gatgccttgatcgacgccggagtgaagtggcaggaggtcgagatcgaggcgcgtccgcgc
ccgctcgaaggccagacctgggtgctcaccgggtcgctcgaggagatgagccgcgatcag
gcgcgcgaccggctgatcggtctgggtgccaaggtcagtggcagcgtgtcgaagaagacc
cgctgcgtggtcgccggacccggcgcgggtagcaagctcgccaaggctgaggagctcggc
gtagaggtgatcgatgagcaggccttcctcgctcgtctggtcgagttcgaaagcggcgca
gggggtgatgcatga
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