Halomonas sp. A3H3: HALA3H3_180024
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Entry
HALA3H3_180024 CDS
T10226
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
haah Halomonas sp. A3H3
Pathway
haah03030
DNA replication
haah03410
Base excision repair
haah03420
Nucleotide excision repair
haah03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
haah00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HALA3H3_180024 (ligA)
03410 Base excision repair
HALA3H3_180024 (ligA)
03420 Nucleotide excision repair
HALA3H3_180024 (ligA)
03430 Mismatch repair
HALA3H3_180024 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
haah03032
]
HALA3H3_180024 (ligA)
03400 DNA repair and recombination proteins [BR:
haah03400
]
HALA3H3_180024 (ligA)
Enzymes [BR:
haah01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HALA3H3_180024 (ligA)
DNA replication proteins [BR:
haah03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HALA3H3_180024 (ligA)
DNA repair and recombination proteins [BR:
haah03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HALA3H3_180024 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HALA3H3_180024 (ligA)
MMR (mismatch excision repair)
DNA ligase
HALA3H3_180024 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HALA3H3_180024 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
DZR_2
Motif
Other DBs
NCBI-ProteinID:
CDG51300
LinkDB
All DBs
Position
hala3h3:complement(841763..843796)
Genome browser
AA seq
677 aa
AA seq
DB search
MSQSDSQSLEEINQLRAALDEANYRYYVLDEPTLTDADYDRKFQRLQQLEAEHPELVTPD
SPTQRVGAAPADGFPSVAHAIPMLSLDNAFSRDDILAFAERVAERLECTADDLEFTCEPK
LDGAAVSLVYEQGMLVSGATRGDGRTGEGITSNLRTLRSVPLKLMGKNVPALLEVRGEVI
MRHAGFEALNERAREEGSKVFANPRNAAAGSLRQLDPRITAKRPLEFHAYQAARLEPDLG
DTAHSELMQRLSTLGFRASSELKVVKGPQAVADYCDQLGERRDDLGFDIDGVVIKVNDLR
HQRELGFVARAPRWAVAFKYPAQEEVTTLNDVEFQVGRTGAITPVARLEPVTVAGVTVSN
ATLHNADEIKRLDVMIGDTVSIRRAGDVIPQVVSVHTELRPSDAREIIFPEHCPVCGSDI
ERIEGEAVARCSGGLYCAAQRKEALKHFASRKALDIDGLGEKLIVQLVDLGWVETPAALF
HLSVEQLQSLPRMGEKSATNLVNALETAKSTTLARFIYALGIREVGEATAANLANHFGTL
EAIQAAELEALEAVNDVGPIVAAHVHTFFRQPHNQETIAALIDAGITWQEAEVTQGPTPL
EGQTWVLTGSLESMTRDEGKARLQALGAKVAGSVSKKTTCLVAGEAAGSKLTKAEQMGVE
VVDEATFIERLAEWEQR
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagtctgattctcaatctctggaagagattaaccaactgcgggccgccctggac
gaggccaactaccgttactacgtgctggatgaaccgacgctgacggatgccgactatgat
cgtaaatttcagcgtttacagcagttggaggctgagcatccggagttggtcactcccgat
tcacccactcagcgtgtgggcgctgcccctgcggatggctttccatcggtggcccacgct
atccccatgctgtcgctggataacgcctttagccgtgacgatatcctcgcctttgctgaa
cgggtggccgaacgcctcgaatgcacggcagacgaccttgaatttacctgcgagccaaag
ttggatggcgcggccgtctcgctagtctatgagcagggcatgttggtgagcggtgcgacc
cgcggcgatggccgcaccggcgaaggcattacctctaatctgcgcacgctgcgctcggta
ccgctcaagctgatgggtaaaaacgtgcctgcgctgttagaagtacggggtgaggtcatt
atgcgccatgcgggctttgaggcgctgaacgagcgcgcccgggaagagggcagcaaggtc
tttgccaacccccgcaacgcggcggcaggcagcctgcgccagttggatccacgcatcacg
gcaaaacgcccgctagagtttcacgcttatcaggctgcgcgcttggagccagacttaggg
gatactgcgcacagcgaactaatgcagcgtttgtccacgttaggctttcgcgccagttca
gaattgaaggtggtcaaaggcccgcaggccgttgccgattactgtgaccagttaggcgaa
aggcgagatgatttaggtttcgatatcgacggtgtggtgatcaaggtgaacgacctgcgc
caccagcgcgaacttggctttgttgcccgcgcgccgcgctgggcggtggcgttcaagtat
ccggctcaggaagaggtcaccacgcttaacgatgtggagttccaggtcggccgcaccgga
gcgattacgcccgtggcccgcctggaaccagtcaccgtggccggggtaacggtgtctaat
gcgacgctgcacaacgccgatgagatcaaacgcttggatgtcatgatcggcgatacggtg
tcgattcgccgggccggtgatgtgattcctcaagtggtgagcgtgcataccgagctgcga
ccatcggatgccagggagatcatttttcccgaacattgcccggtgtgcggttcggatatc
gagcgtattgaaggtgaagcggtagctcgctgttcggggggcctttactgtgcggcgcag
cgtaaagaagcgctcaagcatttcgccagtcgcaaagcgctggatattgacggcttgggc
gaaaagttgatcgtgcagttagttgatttgggctgggtagaaacgccggcggcgctgttt
cacttgtctgtcgaacagcttcaaagcctgccgcgtatgggcgagaaatcagccaccaac
ttggtcaacgcacttgaaactgctaaatcgactacgctggcgcggtttatttacgcctta
ggcattcgtgaagtaggcgaggcgacggcggccaatctcgccaaccactttggtaccctt
gaggccattcaagccgctgagttggaagcgctggaagcggtcaacgatgtcggcccgatt
gtagccgcccatgtgcatactttcttccgccaaccgcacaaccaggaaaccattgccgcg
ctgattgatgcgggcattacctggcaggaggcggaagtcacccaaggccctacgccgctg
gaaggccagacctgggtgctcaccggctcattggagagtatgacccgcgatgagggcaaa
gcacgcttgcaggcgttgggtgctaaggtggcgggtagtgtatcgaagaagactacctgc
ctggtcgcaggcgaagcggcgggcagtaaacttaccaaagctgaacagatgggcgtggaa
gtagtggacgaagccacctttatcgaacgtttggctgagtgggagcagcgttaa
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