Halorhabdus sp. BNX81: HBNXHr_0965
Help
Entry
HBNXHr_0965 CDS
T09448
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
habn
Halorhabdus sp. BNX81
Pathway
habn03030
DNA replication
habn03410
Base excision repair
habn03420
Nucleotide excision repair
habn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
habn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HBNXHr_0965 (ligA)
03410 Base excision repair
HBNXHr_0965 (ligA)
03420 Nucleotide excision repair
HBNXHr_0965 (ligA)
03430 Mismatch repair
HBNXHr_0965 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
habn03032
]
HBNXHr_0965 (ligA)
03400 DNA repair and recombination proteins [BR:
habn03400
]
HBNXHr_0965 (ligA)
Enzymes [BR:
habn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HBNXHr_0965 (ligA)
DNA replication proteins [BR:
habn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HBNXHr_0965 (ligA)
DNA repair and recombination proteins [BR:
habn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HBNXHr_0965 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HBNXHr_0965 (ligA)
MMR (mismatch excision repair)
DNA ligase
HBNXHr_0965 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HBNXHr_0965 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
HHH
DNA_ligase_ZBD
TetR_C_6
Nlig-Ia
BRCT_2
IPPT
RUBY_RBDX
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
WEL21034
LinkDB
All DBs
Position
976295..978376
Genome browser
AA seq
693 aa
AA seq
DB search
MTAVEPPDNPYVEDPSTDFEPIENFDTETAREQATQLREAIRYHDHRYYVENDPVIGDRT
YDALFARLQDLEDHFDLDREGSPTQRVGGEPLDELESVEHVAPMQSIDQGGEESDVREFD
DRVARGLADAGFDPDARTYFCEPKFDGLSVEIVYEDGVYQRAATRGDGEVGEDVTENVRT
IPSVPGRLRGDFPEFLAVRGEVYIPTDAFQAYNRERIERGDDPFANPRNAAAGTLRQLDP
SITAERPLSIFFFGVLDASVEFERNSEVYDRLPEWGLRVTDLAEEVDSIDAAIDYRDRLL
DRRDDLPFEIDGVVLKLNDRAACEALGSTARAPRWAFAYKFPARTERTTIRDVVVQVGRT
GRLTPVALMDPVEVGGVTVSRASLHNPAEIERLGVGIGDEVRVQRAGDVIPEVAEVVEAA
SEGTVEFPETCPVCDSPVERDGPLAFCTGGLACPAQLERAIVHYASRAGLDIEGLGEERV
QQLLDAGLVEELADLYELGQLDLTSLEGWGMQSVANLQDELEASREPPLDDFLAALNVPS
LGDATATALAREFGTFEAVMDADREQLQAVDDVGPKVAAEIREFFESERNRAAIERLLEH
VEPQPYEVEGGAELDGLTFVFTGSLDGYTRSEAQELVETHGGSATSSVSGNTDYLVVGEN
PGQRKRDDAETNDVPIVDEDDFEELLAERGVLE
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgacagcggtcgaaccgccggataacccttacgtcgaggacccgtcgacggacttcgag
ccgatcgagaatttcgacactgaaaccgcccgcgaacaggccacacagttgcgggaagcg
atccggtatcacgaccaccgctactacgtcgagaacgatcccgtgatcggcgatcggacc
tacgacgccctctttgcccgcctgcaggatctcgaagatcatttcgatctcgaccgggaa
ggcagtcccacccagcgtgtcggcggtgaaccgctcgacgaactcgagtccgtcgagcac
gtcgcgcccatgcagtcgatcgaccagggcggcgaggagagcgacgtccgggagttcgac
gaccgcgtcgcccgtggactcgccgacgcgggcttcgatcccgacgcgcggacctacttc
tgtgagccgaagttcgacggcctctcggtcgaaatcgtctacgaggacggcgtctaccag
cgggcggcgacccgcggggacggcgaggtcggcgaggacgtcaccgagaacgtccggacg
atcccgagcgttccgggccgcctccggggtgatttccccgagtttctggcggtccgcggg
gaggtctacatccccaccgacgcgttccaggcgtacaaccgcgaacgcatcgagcgcggc
gacgaccccttcgccaacccccggaatgcggccgccgggacgctccgccaactcgacccg
tcgatcaccgccgaacgaccgctctcgatcttcttcttcggcgtcctcgatgcgagcgtc
gagttcgaacggaacagcgaggtctacgaccgtctccccgagtggggactgcgggtgacc
gacctcgccgaggaagtcgactcgatcgacgctgccatcgactaccgcgaccggctgctc
gatcggcgcgacgatctccccttcgagatcgacggcgtcgtgctcaagctgaacgaccgg
gcggcctgcgaggcactcggctcgacggcgcgcgcgccgcggtgggctttcgcctacaag
ttccccgcccggaccgagcgcacgacgatccgggacgtcgtcgtccaggtcggccggacc
ggtcggctgacgccggtcgcgctcatggacccggtcgaggtcggcggcgtgacggtctcg
cgtgcctcgctgcacaaccctgccgagatcgagcgcctcggggtcggaatcggcgacgag
gtgcgcgtccagcgggccggcgacgtgattccggaggtcgcggaggtcgtcgaagcggcg
agtgagggcaccgtcgagttcccggagacgtgtcccgtctgtgacagcccggtcgagcgc
gacggcccgctcgcgttctgtaccggcggactggcctgtccagcccagttagagcgggcg
atcgtccactacgccagccgcgccggcctcgacatcgagggactgggtgaggaacgcgtc
cagcaactcctcgatgccggactggtcgaggaactcgccgacctctacgaactcggacag
ctcgatctcacgtcactggagggctgggggatgcagtcggtcgccaacctgcaggacgaa
ctcgaagcgagtcgcgagccaccgctcgatgatttcctcgcggcgctgaacgtcccctcg
ctcggcgatgcgacggcgactgctctcgcccgggagttcgggacgttcgaggccgtgatg
gacgctgaccgcgagcagttgcaggcggtcgacgacgtcgggccgaaagtcgccgcggag
atccgggagttcttcgagagtgagcgcaaccgcgcggccatcgagcgcctcctcgaacac
gtcgagccccagccctacgaggtcgaaggcggtgcggaactcgacgggctgacgttcgtg
ttcaccgggtcactggacggctacacccggagtgaggcgcaggaactcgtcgagacccac
ggcggatcagcgacgagcagcgtctcgggcaacacggattacctggttgttggcgagaat
ccgggccagcgcaagcgtgacgacgccgagactaacgacgttccaatcgtcgacgaggac
gacttcgaggaactgcttgccgaacgtggcgtcctggagtga
DBGET
integrated database retrieval system
