Helicobacter acinonychis: Hac_0831
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Entry
Hac_0831 CDS
T00371
Symbol
lig
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hac
Helicobacter acinonychis
Pathway
hac03030
DNA replication
hac03410
Base excision repair
hac03420
Nucleotide excision repair
hac03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Hac_0831 (lig)
03410 Base excision repair
Hac_0831 (lig)
03420 Nucleotide excision repair
Hac_0831 (lig)
03430 Mismatch repair
Hac_0831 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hac03032
]
Hac_0831 (lig)
03400 DNA repair and recombination proteins [BR:
hac03400
]
Hac_0831 (lig)
Enzymes [BR:
hac01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Hac_0831 (lig)
DNA replication proteins [BR:
hac03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Hac_0831 (lig)
DNA repair and recombination proteins [BR:
hac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Hac_0831 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Hac_0831 (lig)
MMR (mismatch excision repair)
DNA ligase
Hac_0831 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Hac_0831 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
Nlig-Ia
HHH_2
PTCB-BRCT
HHH_5
BRCT_2
DUF2119
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
CAJ99615
UniProt:
Q17XL1
LinkDB
All DBs
Position
complement(719342..721306)
Genome browser
AA seq
654 aa
AA seq
DB search
MIKSQKEYLERIEYLNTLSHHYYNLDEPIVSDAVYDELYQELKAYEEKNPSQIQANSPTQ
KVGATALNQFNKNPHLTRMWSLDDVFNHNELQAWLQRILKAYPSASFVCSPKLDGVSLNL
LYQKGKLMKATTRGNGLEGELVTTNAKHVANISHTIPYNEEIEIRGEVIISKEDFNALNE
ERLNANEPLFANPRNAASGSLRQLDSKITKKRKLQFIPWGVGKHSLNFLSFKECLDFIVS
LGFSAIKHLSLNKNHQEIEANYHTLIQERERFFALLDGMVIVVNELNIQKELGYTQKSPK
FACAYKFPALEKHTKIVGVINQVGRSGAITPVALLEPVEIAGAIITKATLHNYSEIEKKN
IMLNDRVVVIRSGDVIPKIIKPLESYRDGSQCKIIRPKVCPICSHELLCEEIFTYCQNLN
CSARLKESLIHFASKDALNIQGLGDKVIEQLFEEKLIFNALDLYALKLEDLMRLDKFKIK
KAQNLLDAIQKSKNPPLWRLINALGIEHIGKGASKTLAKYGLYVLEKSEDEFLEMEGFGV
EMARSLVNFYASNQEFIQSLFDLLNPKNSDIIEEKQESSSIFSHKTIVLTGTLSKPRQEY
AQILENLGAKISSSVSAKTDFLIVGENAGSKLSLAQKHGVNILNEEELLKYLKE
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgataaaaagccaaaaagaatatttagaaagaattgaatatttaaacaccctatcgcac
cactattacaaccttgatgagccgatcgtaagcgatgcggtctatgatgaactctatcaa
gaattaaaagcttatgaagaaaaaaaccctagccaaattcaagccaactcccccacccaa
aaagtgggggctactgcactcaaccaattcaataaaaacccccatttaacgagaatgtgg
agtttagatgatgtattcaatcataacgaattgcaagcgtggttgcaacgcattttaaaa
gcttaccctagtgcttcgtttgtgtgttcgcctaaacttgatggggtttcgctcaatctt
ttgtatcaaaaaggcaagttaatgaaggcgaccactaggggcaatggattagaaggagaa
ttagttactacaaatgccaaacatgtcgctaatatctctcacactatcccttataatgaa
gaaatagaaatcaggggcgaagtgatcatttctaaagaggattttaacgctttgaatgaa
gaacgcctaaacgctaacgaacccctattcgctaaccctagaaatgccgcatcagggagt
ttgagacagcttgatagcaaaatcactaaaaagcgtaaattgcaattcattccttggggc
gtgggcaagcactctttaaatttcttaagctttaaggaatgtttggattttattgtctcg
ttaggttttagcgctattaaacatttaagcctaaacaaaaaccaccaagaaatagaagcg
aattatcacactctcattcaagaaagagagagattttttgcccttttagacggcatggtg
atcgttgtgaatgaattgaatatccaaaaggagttaggttatacgcaaaaatcccccaaa
ttcgcttgcgcttataaattccccgctctagaaaaacacaccaaaattgtaggagttatt
aaccaagtggggcgcagtggggcgatcaccccagtcgctcttttagagccggtagaaatc
gctggggctatcatcactaaagcgacattacacaattattctgaaattgaaaaaaagaat
atcatgctcaatgatagggtcgtagtcattagaagcggcgatgtgatccctaaaatcatc
aagcctttagagtcttatagggacggttcgcaatgcaaaattatacgccccaaagtttgc
cccatatgctcgcatgaactcttatgcgaagagatttttacttattgccaaaaccttaat
tgctccgcaagattgaaagaaagcttgattcattttgcttctaaagacgctttaaacatt
caaggcttaggcgataaagtcatagagcagctttttgaagaaaaactcatttttaacgcc
ctagatttgtatgctttaaaattagaagatttaatgcggctagacaaattcaaaattaaa
aaagctcaaaatttattagacgctattcaaaagagcaaaaacccccctttatggcgtttg
atcaatgctttagggattgaacatatcggtaagggagcgagtaaaacgttggccaaatac
ggcttatatgtgttagaaaaaagcgaagatgagtttttagaaatggagggctttggggtg
gaaatggcgcgttctttagtcaatttttatgcgagcaatcaagagtttatccaatcatta
tttgatttattaaaccctaaaaatagcgatataattgaagaaaagcaagaaagctcttca
atttttagccataaaacgattgttttaaccggcacgctctctaaaccacggcaagaatac
gctcaaatcttagaaaatttaggggcaaaaatttcttcaagcgtgagcgctaaaaccgat
tttttgatcgttggagaaaatgccggctcaaaactttctctagcacaaaaacatggcgtt
aacattttgaatgaagaagaattattaaaatatcttaaagaatga
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