Hypericibacter adhaerens: FRZ61_11350
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Entry
FRZ61_11350 CDS
T06413
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hadh
Hypericibacter adhaerens
Pathway
hadh03030
DNA replication
hadh03410
Base excision repair
hadh03420
Nucleotide excision repair
hadh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hadh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FRZ61_11350 (ligA)
03410 Base excision repair
FRZ61_11350 (ligA)
03420 Nucleotide excision repair
FRZ61_11350 (ligA)
03430 Mismatch repair
FRZ61_11350 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hadh03032
]
FRZ61_11350 (ligA)
03400 DNA repair and recombination proteins [BR:
hadh03400
]
FRZ61_11350 (ligA)
Enzymes [BR:
hadh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FRZ61_11350 (ligA)
DNA replication proteins [BR:
hadh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FRZ61_11350 (ligA)
DNA repair and recombination proteins [BR:
hadh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FRZ61_11350 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FRZ61_11350 (ligA)
MMR (mismatch excision repair)
DNA ligase
FRZ61_11350 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FRZ61_11350 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
QEX21213
UniProt:
A0A5J6MVR0
LinkDB
All DBs
Position
complement(1262247..1264415)
Genome browser
AA seq
722 aa
AA seq
DB search
MTKKPAAKKAAAVEELTRAQAEAELARLAAEIAHHDQLYHQKDAPEISDAEYDALVARNR
AIEKRFPELKRGDSPSARVGAAPASGFAKVTHSRPMLSLDNGFSTEDVTDFLGRIRRFLK
LPEDGDIEMVAEPKIDGLSAALTYEDGHFVQGATRGDGTVGEDITRNLATIADLPKQLKG
RHQGKLIEVRGEVYMRHVDFQKLNKSREAEGEPVFANPRNAAAGSVRQLDPTITARRPLH
FFAYTEGETSGATDDCKTHWAFLERLREWGFTVNPLIERCESEKALLAFYERIGERRAQL
DYDIDGVVYKVNRRDWQQRLGFVGRAPRWALAHKFPAERAETRLNQIRIQVGRTGTLTPV
AELQPITVGGVVVSRATLHNEDEIERKDIREGDWVIVQRAGDVIPQVVEVVKKRRPRDSK
PYRFPQKCPVCGSLAVREIDEAARRCTGGLICSAQAVERLRHFVSRGAADIEGMGEKHIQ
AFWDEGWLKTPADIYRLHKHRDALLGREGWGEQSVKKLLDAIDARRRIPLDRFIYALGIR
QVGDQTAKLLARHYETLASWRDAMIEASQGLEKAAKQSSDELPLDVWQLAASLSPAIRDL
DDIEGIGPSVANDIVEFFAEKHNREVLKELEKEIEVQPFKAPKLGNSPVAGKTVVFTGTL
ETMGRNEAKARAESLGAKVSGSVSSKTDYVVVGADAGSKAKKAAELGVKTLSEQEWLELI
GG
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgacgaagaagcccgcggcgaagaaggcggcggcggtcgaggagctgacccgcgcccag
gcggaagcggagctcgcgcgcctggccgccgagatcgcgcatcacgaccagctctatcac
cagaaggacgcgcccgagatctcggacgccgagtatgacgcgctggtggcccgcaaccgg
gcgatcgagaaacgcttcccggaactgaagcgcggcgacagcccgtctgcacgcgtcggc
gcggcacccgcgagcggcttcgccaaggtgacgcacagccgcccgatgctctcgctcgac
aacggcttcagcaccgaggacgtgacggacttcctcggccgcatccgccgtttcctcaag
ctgccggaggacggcgatatcgagatggtggccgagcccaagatcgacgggctctcggcg
gccttgacctacgaggacggtcatttcgtccagggcgccacgcgcggcgacggcacggtg
ggcgaggacatcacgcgcaatctcgccaccattgccgacctgcccaagcagctgaaaggc
cgccatcagggcaagctcatcgaggtgcgcggcgaagtctatatgcgccacgtcgatttt
cagaagctcaacaagagccgcgaggccgaaggcgagccggtcttcgccaatccccgcaac
gccgccgccggcagcgtgcgccagctcgaccccaccatcaccgcccgacggccgctgcat
ttcttcgcctataccgagggcgagaccagcggcgccaccgacgactgcaagacccattgg
gccttcctcgagcgcctgcgggaatggggcttcaccgtcaatccgctgatcgagcgctgc
gagagcgaaaaggcgctgctcgccttctatgagcggatcggcgagcggcgcgcgcagctc
gactacgacatcgacggcgtcgtctacaaggtgaaccgccgcgactggcagcagcggctg
ggcttcgtcggcagggcgccgcgctgggcgctggcccacaagttcccggccgagcgcgcc
gagacccggctcaaccagatccgcatccaggtcggccgcaccggcaccctgacgccggtg
gccgagctccagccgatcacggtcggcggcgtcgtggtctcgcgcgcgacgctccataac
gaggacgagatcgagcgcaaggatatccgcgagggcgactgggtcatcgtgcagcgggcc
ggcgacgtgatcccgcaggtggtcgaggtcgtcaagaaaaggcggccccgggattcgaag
ccttatcggtttccgcaaaaatgcccggtctgcggcagcctggcggtgcgcgagatcgac
gaggccgcgcgccgctgcaccggcggactgatctgctcggcgcaggccgtcgagcggctg
cgccatttcgtcagccgcggcgccgcggatatcgaggggatgggcgagaagcatatccag
gcgttctgggacgagggctggctcaagacgccggccgacatctaccgcctgcacaagcac
cgtgacgcgctgctcgggcgcgaaggctggggcgagcagtcggtcaagaagctcctggac
gcgatcgacgcgcgccgccggatccccctcgatcgcttcatctatgcgctgggcatccgc
caggtcggcgaccagaccgcgaagctcctggcccggcattacgagaccctggccagctgg
cgggacgccatgatcgaggcgagccaaggcctggagaaggccgcgaagcaatcgagcgac
gagttgccgctcgacgtctggcagctggccgcgagcctcagccctgccatccgcgatctc
gacgatatcgagggcatcggcccctcggtcgccaacgacatcgtggagttcttcgccgag
aagcataaccgcgaggtgctgaaggagctggagaaggagatcgaggtccagcccttcaag
gcgcccaagctcggcaactcgccggtggcgggcaagaccgtggtcttcaccggcacgctc
gagaccatgggccgcaacgaggccaaggcccgggccgaatcgctcggcgccaaggtctcg
ggctcggtctccagcaagaccgactatgtcgtggtcggcgccgatgccggctccaaggcc
aagaaggccgccgagctcggcgtcaagacgctgagcgagcaggagtggctcgagctcatc
ggcgggtga
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