Halomonas sp. DN3: NKF27_16725
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Entry
NKF27_16725 CDS
T10930
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hadn Halomonas sp. DN3
Pathway
hadn03030
DNA replication
hadn03410
Base excision repair
hadn03420
Nucleotide excision repair
hadn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hadn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NKF27_16725 (ligA)
03410 Base excision repair
NKF27_16725 (ligA)
03420 Nucleotide excision repair
NKF27_16725 (ligA)
03430 Mismatch repair
NKF27_16725 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hadn03032
]
NKF27_16725 (ligA)
03400 DNA repair and recombination proteins [BR:
hadn03400
]
NKF27_16725 (ligA)
Enzymes [BR:
hadn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NKF27_16725 (ligA)
DNA replication proteins [BR:
hadn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NKF27_16725 (ligA)
DNA repair and recombination proteins [BR:
hadn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NKF27_16725 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NKF27_16725 (ligA)
MMR (mismatch excision repair)
DNA ligase
NKF27_16725 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NKF27_16725 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
Nlig-Ia
DZR_2
5_3_exonuc
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
USZ49126
LinkDB
All DBs
Position
complement(3889035..3891077)
Genome browser
AA seq
680 aa
AA seq
DB search
MTTDASTRDEVARLRTELDDANYRYHVLDDPRLPDAEYDRLLRRLTELEQAHPELASPDS
PTQRVGAKPADGFPEVTHALPMLSLDNAFDDDEIRAFVKRVAERMELDAEALFFSCEPKF
DGAAVSLVYEDGVLVSGATRGDGRTGEGILSNLKTLKSIPLRLRGETPPTLMEVRGEVIM
RHQEFEAMNERAREQGSKVFANPRNAAAGSLRQLDPRVTATRPLEFRGYQVARLEPDGGA
STHSELMQRVAEVGLPVSRELEVVKGADGVIDYCRRLGERRERLDVDIDGVVIKVDELRL
QRELGFVSRAPRWAIAFKFPAQEQTTTLTDVEFQVGRTGAITPVARLDPVSVAGVTVSNA
TLHNADEIARLGVRIGDRVAIRRAGDVIPQVVRVVEAAGEGQDIVFPERCPVCESEIERI
EGEVVARCSGGLVCAAQRKEALKHFASRRAMDIDGLGVKLIDALVERDRVKTPADLFSLS
AERLAELPRMAEKSASNLVEALERAKATTLARFIYALGIREVGEATAANLASHFGNLDAL
KQADRETLEAVDDVGPVVAAHIATFFQQAHNLETLEALIAAGVHWDEVDVGERPTPLEGQ
TWVLTGTLETMTRDEGKARLQALGAKVAGSVSKKTHCLVAGPGAGSKLAKAEQAGVEVID
EATFLARLNEWESESSEEQA
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccgatgcttcgacccgtgacgaggtcgcgcggcttcgcaccgaactcgatgac
gccaactaccgctatcacgtgctcgacgacccgcgcctgcccgacgccgagtacgaccgg
ctgctgcgtcggctgacggagctcgaacaggcccatcccgagcttgcgagccccgactcg
ccgacccagcgggtcggtgccaagcccgccgacggcttccccgaggtgacccacgcgctg
cccatgctgtcgctggacaacgccttcgatgacgatgagatacgagccttcgtcaagcgg
gtggccgagcgtatggaactggacgccgaggcgctgttcttcagttgtgagcccaagttc
gacggcgccgcggtctcgctggtctacgaagacggtgtgctggtcagcggtgccacacgt
ggcgacggccgtaccggcgagggcatcctgtccaatctgaagacgctgaagtccattccg
ctgcgcctacggggcgagacgccgccgacgctgatggaggtgcgcggcgaggtcatcatg
cgtcaccaggagttcgaggcgatgaacgagcgtgcccgtgagcagggcagcaaggtcttc
gccaatcctcgtaatgccgccgccggcagcctgcgccagctcgaccccagggtgaccgcc
acgcggccactcgaattccgtggctaccaggtagcgcgccttgagcccgatggaggcgcg
agcacccatagcgaactgatgcagcgggtggccgaggtcggcctgccggtcagtcgcgag
ctcgaagtggtcaagggggcggacggtgtgatcgactactgccgccgcctgggggagcgt
cgtgagcgcctggacgtcgatatcgacggggtggtgatcaaggtcgacgagctacgcctg
cagcgcgagctgggcttcgtttcgcgggcgccgcgctgggccatcgccttcaagttcccg
gcccaggagcagaccacgaccctcaccgacgtggaatttcaggtggggcgcaccggggcg
atcaccccggtggcacggctcgatccggtcagcgtggccggggtgacggtgtccaacgcc
accctgcacaacgccgacgagatcgcgaggcttggcgtgcgcatcggcgaccgggtcgcc
attcgccgcgccggcgacgtgatcccccaggtggtcagggtggtcgaggcggcaggcgaa
ggccaggatatcgtcttccccgagcgctgcccggtgtgcgagtccgagatagagcggatc
gagggcgaggtggtggcacgctgctccggcgggctggtatgcgccgcccagcgcaaggag
gcgctcaagcacttcgcctcgcgccgggcgatggacatcgatggcctcggcgtcaagctg
atcgatgccctggtcgagcgggaccgggtcaagaccccggcggacctgttcagcctgtcc
gccgagcgactggcagaattgccgcgcatggccgagaagtcggcgagcaatctggtcgag
gcgctggaaagggccaaggccaccaccctggcacgctttatctacgccctgggtatccgc
gaggtcggcgaggccaccgcggccaacctggcgagccacttcggcaacctcgatgccctc
aagcaggccgaccgtgagacgctggaggcggtggacgacgtgggtccggtggtggccgcc
catatcgccacctttttccagcaggcgcacaatctcgaaacgctggaggcgttgatcgcc
gcgggggtgcactgggacgaggtcgacgtcggcgagcgccccacgccattggaaggccag
acctgggtgctcaccggtactctggagaccatgacaagggacgagggcaaggcgcgcctg
caggcgctgggcgccaaggtggccggcagcgtgtcgaagaagacccattgcctggtggcc
ggccccggtgccggcagcaaactggccaaggccgagcaggcgggggtcgaggtgattgac
gaggcgaccttcctcgcgcgcctgaacgagtgggaatccgagagttcggaggagcaagca
tga
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