Halohasta litchfieldiae: halTADL_1886
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Entry
halTADL_1886 CDS
T05239
Name
(GenBank) DNA ligase (NAD+)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hae
Halohasta litchfieldiae
Pathway
hae03030
DNA replication
hae03410
Base excision repair
hae03420
Nucleotide excision repair
hae03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
halTADL_1886
03410 Base excision repair
halTADL_1886
03420 Nucleotide excision repair
halTADL_1886
03430 Mismatch repair
halTADL_1886
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hae03032
]
halTADL_1886
03400 DNA repair and recombination proteins [BR:
hae03400
]
halTADL_1886
Enzymes [BR:
hae01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
halTADL_1886
DNA replication proteins [BR:
hae03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
halTADL_1886
DNA repair and recombination proteins [BR:
hae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
halTADL_1886
NER (nucleotide excision repair)
GGR (global genome repair) factors
halTADL_1886
MMR (mismatch excision repair)
DNA ligase
halTADL_1886
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
halTADL_1886
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
HHH
DNA_ligase_ZBD
Nlig-Ia
DZR_2
PTCB-BRCT
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
ATW88639
UniProt:
A0A1H6QV70
LinkDB
All DBs
Position
complement(1816895..1818994)
Genome browser
AA seq
699 aa
AA seq
DB search
MSRVDESNPYLRDPPTEFESVEELSETDAAEQAQQLRAAIREHDHRYYVEADPLIADRVY
DLLFARLQDLEAEFNLAERDSPTQRVGGQPVDELQTVEHTAPMLSIEQSGEAEDVREFDE
RVRRELGDEGMDPAGYVCEPKFDGISLEAVYEEGRLVRAATRGDGREGDDVTAQVRAIPS
VPQRLRGEYPDFLAVRGEVFMPKDGFREHNRQRIERGKEPFANPRNATAGTIRQLDPSVV
ASRPLDCFFYGIMAYEDADRERPETQWAELDAFRSWGFHVDDLAEHVDNIEAAIDYRDEL
MERREDLNYEIDGVVIKVNDIAACEMLGNTSRATRSAFAYKFPARTEITGITDIVVQVGR
TGRMTPVALLEPVQVGGVTVSRATLHNPGEIESLGVDVGDTVRVLRAGDVIPYIDEVVDA
ASDSTFAFPDHCPVCESPVERDGPLAFCTGGLACQSQVDRAIEHYVSRGGLDIEGLGPER
ISQLREAKLVDSLADLYGLDREALADLEGWGDKSAENLLAEIDAAREPPLDSFLTALSIP
EVGSATATALAREFGSLAAVIHAEPDELEAVDDVGPIVAEKIRDFFDSEENRAALDGLLA
AGVDPQSVDIAETAADLAGLTFVFTGSLSVARSDAQDLVEAHGANATGSVSGNTDYLVIG
ESPGQRKQDDAADNDVPVLDEAEFVDLLADHGIEWPPES
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcgtcgacgagtcgaacccctatctccgcgatccacccaccgagttcgagtcg
gtcgaagaactctccgagactgacgccgccgagcaggcccaacagctccgagcggcgatt
cgggaacacgaccaccgctactacgtcgaggccgaccccctgattgctgatcgcgtctac
gatctgctgtttgcccgcctccaagatctcgaagccgagttcaatctcgccgaacgcgat
agccccacccagcgcgtcggcggccagccggtcgacgaactccagacggtcgaacacacc
gcgccgatgctctcgattgagcaaagcggcgaggccgaagacgtccgggagttcgacgag
cgcgtccggcgagaactgggcgacgagggaatggaccccgcaggctacgtctgtgaaccc
aaattcgacggcatctcgctggaagcagtgtacgaggagggtcgactcgtccgggcggcc
actcgcggcgacggtcgggagggcgacgacgtcaccgcccaagtccgagccattccctcg
gtgccccagcgactccgcggcgagtatcccgattttctcgctgttcgcggcgaggtattt
atgccgaaggatgggttccgagagcacaaccgccagcgaatcgaacgcggcaaggagccg
tttgccaacccccgcaatgcgactgctggaaccatccgtcaactcgatccctcggtcgtc
gcgtctcggccactggactgctttttctatgggatcatggcctacgaggatgccgaccgc
gagcgcccagagacccagtgggccgaactcgatgcgttccggtcgtgggggttccacgtc
gacgacctcgccgagcacgtcgacaacatcgaggcggccatcgactaccgcgacgaactg
atggagcgacgcgaggatctcaactacgagatcgacggcgtcgtcatcaaagtcaacgac
atcgccgcctgcgagatgcttggcaacacgtcccgtgccactcggtccgcattcgcgtac
aaatttcctgcccgcacggagatcacagggattactgatatcgtcgtgcaggtcggccgg
actggccgcatgacgccggtggctctgctcgaaccggtgcaggtcggcggcgtcaccgtc
tcgcgggcgacgctccacaaccccggcgagatcgaatcgctgggcgtcgacgtaggcgac
acggtccgggtgctccgggcgggcgacgtgatcccctacatcgacgaggttgtcgacgcc
gccagcgactccaccttcgcgttccccgaccactgtccggtctgtgagagtcccgtcgag
cgtgatgggccactcgcgttctgtaccggcgggttagcctgccaatcgcaggtcgaccgc
gccatcgaacactacgtcagccgcggcggcctcgacatcgaggggctgggtcccgagcgc
atcagccagcttcgagaagcaaagttggtcgactcgctggccgacctctacggcctcgac
cgcgaggcactggccgacctggagggctggggcgacaaaagcgctgaaaacctcctcgcg
gagatcgatgccgcccgcgagccgccgctcgattcgtttctcaccgcgctgtcgattccc
gaggttggctccgctacggccaccgcactggcccgtgagttcggttcgcttgcggcggtg
atacacgccgaaccggacgaactggaagccgtcgacgacgtcggtccaatcgtcgccgag
aaaattcgggactttttcgacagtgaggaaaaccgcgctgcactcgatgggctgctggcg
gcgggggtcgacccacagtcggtcgacatcgcagagacagccgccgacctcgctgggctt
acgttcgtcttcactggctcgctgtcggtcgcccgaagcgacgcccaagatctcgttgaa
gcccacggcgcgaacgcaacggggagcgtttcggggaacactgactacctcgttatcggc
gagagtccgggccagcgcaagcaggacgatgcggcagacaacgacgtgccggtgctggac
gaagccgagttcgtcgacctactggccgatcacggtatcgagtggccgcccgagtcgtag
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