Hymenobacter aerilatus: MUN82_08250
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Entry
MUN82_08250 CDS
T09397
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
haei
Hymenobacter aerilatus
Pathway
haei03030
DNA replication
haei03410
Base excision repair
haei03420
Nucleotide excision repair
haei03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
haei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MUN82_08250 (ligA)
03410 Base excision repair
MUN82_08250 (ligA)
03420 Nucleotide excision repair
MUN82_08250 (ligA)
03430 Mismatch repair
MUN82_08250 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
haei03032
]
MUN82_08250 (ligA)
03400 DNA repair and recombination proteins [BR:
haei03400
]
MUN82_08250 (ligA)
Enzymes [BR:
haei01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MUN82_08250 (ligA)
DNA replication proteins [BR:
haei03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MUN82_08250 (ligA)
DNA repair and recombination proteins [BR:
haei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MUN82_08250 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MUN82_08250 (ligA)
MMR (mismatch excision repair)
DNA ligase
MUN82_08250 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MUN82_08250 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
BRCT_2
Auto_anti-p27
Zn_ribbon_NUD
Zn_ribbon_FGT1_2
HHH
Motif
Other DBs
NCBI-ProteinID:
UOR07078
UniProt:
A0A8T9SYD3
LinkDB
All DBs
Position
1940687..1942810
Genome browser
AA seq
707 aa
AA seq
DB search
MSSIQEQISTLTARLHHLNYQYYQNDVSEVPDQEFDKMLAELAALEKAHPELALPNSPTQ
RVGGTITKQFPTALHRYPMLSLGNTYSEADLRDFDERVQRGLEGAEYAYVCELKFDGVAM
SLTYQNGQLTQGVTRGDGTRGDVVTSNVRTIKNLPLHLRNTGPTQPEEFEVRGEIFMPQP
VFAELNQEREANGEALLANPRNAASGALKLQDSALVAARRLRFFAYSYLSQGRDFPTHSA
ALEALRAWGLPVSDTWRKCHSLDEVLEFIHYWDKHRFTLPVATDGIVVKIDDLRQQELLG
YTAKSPRWAIAYKYPAEAGRTRLREIQYQVGRTGAVTPVALLDPVPLAGTIVKRASVHNA
NQIAALDLRLGDMVFVEKGGEIIPKITSVDLTARPADSQPIIYPTECPACGTPLIRPEGE
AHFRCPNDRGCPPQLKAKLEHFVSRKALDIDGLGAETVGRFFDLGLVTDAASLYDLPGKA
AELAQLERMGEKSVQRLVAGLEASKQVPFDRVLFGLGIRYVGETVAEKLAAHYRTVKALE
AATAETLAAVPEVGGVIAVSVAAWFQEPQNREMVERLRAAGVQLALTGEAPKAQSDRLAG
QTFVLSGVFEQHSREELQQLIQQHGGKVTGSISKKLSYLVAGDKMGPAKREKATELKVPI
ISETDLLAMLPDATTLPDSEAEAAADSALDDLTAPTPPQGGQASLFS
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgtccagcattcaggaacagatatccaccctcacggcccgcctgcaccacctcaactat
cagtactaccagaacgacgtgtcggaagtacccgaccaggagttcgacaagatgctggct
gagctggcagccctcgaaaaagcccaccccgagctggccctacccaactcgcctacccag
cgtgtggggggcaccatcaccaagcagttccccacggctctgcaccgctaccccatgctc
agcctgggcaatacctactcggaggccgatctgcgggacttcgacgagcgggtgcagcgc
ggcctggaaggtgcggagtacgcctacgtgtgcgagctgaagttcgacggtgtggccatg
agcctgacctaccagaatggccagctcacgcagggcgtcacgcgcggcgacggcacccgc
ggcgatgtggtgaccagcaacgtgcgcaccatcaaaaacctacccttacacctgcgcaac
actggccctacccagcccgaggagtttgaggtgcgcggtgaaatctttatgccccagccg
gtttttgcggagctaaaccaggagcgtgaggctaatggcgaagctttgctagctaatccg
cgcaacgcggccagcggcgccctcaagctgcaagactcggcgttggtggctgcgcggcgg
ctgcgcttttttgcctacagctacctcagccaaggccgcgacttccctacccacagcgct
gccctggaagccctacgcgcatggggcctacctgtgtcggacacgtggcgcaagtgtcac
tcactggatgaggtactagagtttattcattattgggacaagcaccgcttcaccctaccc
gtggctaccgacggtattgtggtgaagatagacgacctacgccagcaggagctgctaggc
tacacggccaaaagtccgcgctgggctattgcgtataaatatcccgccgaggccggccgc
acccgcctgcgcgagatacagtaccaggtaggccgcaccggcgccgtgaccccggtagcc
ctgctcgacccggtaccgctagccggtaccatcgtgaagcgcgcttcggtgcacaacgcc
aaccagattgccgccttggatttacgcctgggcgacatggtgtttgtagagaaaggcggt
gaaatcatccctaagattaccagcgtcgacctcactgcccgccctgccgacagtcagccc
atcatctatcctaccgagtgcccggcttgcggcacgccgctaattcggcccgagggtgag
gcgcacttccgctgccccaacgaccggggctgcccgccccaactcaaagccaaactggag
cactttgtgtcgcgcaaggccttggatattgacggtttgggcgccgaaactgtgggccgc
ttctttgacctggggctggtgacggacgccgcgagcctatacgacctgcccggcaaggcc
gccgaactcgctcagctcgagcgcatgggtgaaaaatcggtgcagcgcctggtagcgggt
ctggaggccagcaagcaggtgccattcgatcgagtgttgtttggtttgggcattcgctat
gtgggcgaaaccgtagccgagaagctggccgcgcactaccgcacggtgaaggcgctggaa
gctgctacggccgagacgctggccgccgtgccagaggtaggcggcgtcattgccgtatcg
gtagcggcgtggtttcaggagccgcagaatcgcgagatggtggagcgtttgcgggcagcg
ggcgtgcaactagccctcaccggcgaggcccctaaggctcagagcgaccgactagccgga
caaaccttcgtgctgtcgggtgtgtttgagcagcacagccgcgaggagttgcaacagctc
atccagcagcacggcggcaaggtaacgggcagcatcagcaagaagctgagctacctggta
gccggcgacaagatgggtcccgccaagcgcgaaaaggccacggagctgaaggtgccaatt
atttcggaaaccgatctgctagccatgctcccggatgccactaccctccccgactccgag
gctgaagctgccgccgattctgctctggacgacctcactgcgcctaccccaccacaagga
ggtcaggcctcgttattttcgtag
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