Halopseudomonas aestusnigri: LO767_10155
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Entry
LO767_10155 CDS
T07924
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
haes
Halopseudomonas aestusnigri
Pathway
haes03030
DNA replication
haes03410
Base excision repair
haes03420
Nucleotide excision repair
haes03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
haes00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LO767_10155 (ligA)
03410 Base excision repair
LO767_10155 (ligA)
03420 Nucleotide excision repair
LO767_10155 (ligA)
03430 Mismatch repair
LO767_10155 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
haes03032
]
LO767_10155 (ligA)
03400 DNA repair and recombination proteins [BR:
haes03400
]
LO767_10155 (ligA)
Enzymes [BR:
haes01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LO767_10155 (ligA)
DNA replication proteins [BR:
haes03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LO767_10155 (ligA)
DNA repair and recombination proteins [BR:
haes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LO767_10155 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LO767_10155 (ligA)
MMR (mismatch excision repair)
DNA ligase
LO767_10155 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LO767_10155 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
5_3_exonuc
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
UGV29396
LinkDB
All DBs
Position
complement(2228760..2231135)
Genome browser
AA seq
791 aa
AA seq
DB search
MPQHATPAERALALREEIAQHNYRYYVLDEPAVPDAEYDRLFNELKAIEAEHPDLITPDS
PTQRVGGAPASGFGEVRHEVPMLSLGNAFAEQDMLDFDRRVREGLDLPAGDLFGGGAEVE
YCCEPKLDGLAVSLLYENGLLVRGATRGDGTTGEDISTNVRTIRNIPLKLRGEGWPAVLE
VRGEVFMSKAGFEALNERAREAGSKTFANPRNAAAGSLRQLDPTITASRPLEFCCYGFGR
VDGELPDNQYAILQAFKGWGIPISRELKLVKGVDGTLDYYRDIGERRAGLEYEIDGVVFK
VNQLSYQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVQVAG
VTVSNATLHNMDEVARLGVMIGDTVIIRRAGDVIPQVMQVVAERRPAGARPVEVPTACPV
CGSAVERTQLVKRGKSGSTTSEGSVYRCVGRLTCQAQLKQSIIHFVSRRAMDIDGLGEKS
VEQLVDTGLVASPADLYRLTFEQVLALEGFAELSTKNLLTAIQASKKPTLARFIYALGIP
DVGEETAKLLARALGKLERIERALPEVLVYLPDVGLEVAHEIHSFFADAHNRQVIDQLLE
RGVTPEEPGELAAEFAACVSLADFLARLNIPGIANTGAERLASQFGSLEKIINADWLDLK
QVERLNDKAIKALREYFQNQALRAGAEAVEQQLRDFGMHWQSPRAETSGGLLLAGQTWVL
TGTLEAMSRDVAKGHLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKAEQLGVNVWTEQQL
LDMLAEHGISA
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atgccccagcacgccactcccgccgaacgcgcccttgccctgcgtgaggaaatcgcgcag
cacaattaccgctactacgtcctcgacgagcctgcagtgccggacgccgagtatgatcgg
ctgttcaacgaactcaaggccatcgaggcggagcaccctgatctgatcacccccgactcg
ccgacccagcgggtgggtggtgcgcctgcatcgggcttcggtgaggtcaggcatgaagtg
ccgatgctcagcctgggcaacgcctttgccgagcaggacatgcttgattttgaccgccgg
gtgcgtgaagggctggacctgccggctggcgacctgtttggtggtggggcggaggtcgag
tactgctgcgagcctaaactggatggcctcgcggtcagtctgctttacgagaacgggctg
ttggtgcgcggcgctacccgtggcgacggcacaactggcgaagacatttccaccaacgta
cgcaccattcgcaatattccgctcaagctgcgtggcgagggctggcctgccgtgctggaa
gtgcgcggcgaagtgttcatgagcaaggccggctttgaggcgttgaatgaacgtgcgcgc
gaggcgggcagcaaaaccttcgccaacccgcgtaacgctgcagccggcagcctgcgccag
cttgacccgaccattaccgccagccgcccgctggagttttgctgctatggctttggccgc
gtcgacggcgagctgcccgacaatcagtacgctattttgcaggcgttcaagggctggggg
attccgatcagccgtgaattgaagctggtgaagggcgtggacggcaccctggattactac
cgcgatatcggcgagcgccgcgccgggctggaatacgagatcgacggcgtggtgttcaag
gtcaatcagctgagttatcagcgcgagctgggttttcgcgcccgtgagccgcgctgggcg
attgcccacaagttcccggcaatggaagagctgaccgagctgctggatgtcgagtttcag
gttggccgcaccggtgcggtgacgccggtggcacggctgaagcccgttcaggtagcaggt
gtaaccgtgtccaacgcgacgctgcacaacatggatgaagtcgcacggctgggtgtgatg
atcggcgacaccgtgatcatccgccgcgccggcgacgtgatcccgcaggtgatgcaggtg
gttgccgagcgtcgcccggccggtgcgcgtccggtcgaggtgccaacggcgtgcccggtg
tgtggctctgcggtggagcgcacccagttggtcaagcgcggcaaatcgggttcgaccacc
agcgaaggctcggtctaccgctgtgttggccgtctgacctgtcaggcgcagctcaagcag
tcgatcattcacttcgtttcacgccgcgccatggatatcgacgggctgggcgagaagagc
gtcgagcaactggtagataccgggctggtggcgtccccggcagacctttaccggctgacc
tttgaacaggtgctggcactggaggggtttgccgagctgtcgaccaagaatctgctgacc
gctattcaggccagcaagaagccgacactggctcgtttcatctatgcccttggcattccc
gatgtgggagaagaaaccgccaaactgctggcgcgtgcgctgggcaagctggagcgtatc
gagcgtgccttgcccgaggtgctggtctatctgccggatgtggggctggaagtggcgcac
gagatccactccttcttcgccgacgcccataaccgccaggtcatcgaccagttgcttgag
cgcggtgtcacgcctgaggagccgggcgagctggcggccgagtttgctgcttgcgtctcg
ctggccgattttctggcgcgactgaatatcccgggcatcgccaataccggtgccgagcgg
ctggcgagccagttcggcagtctggagaagatcattaacgctgactggctggacttgaaa
caggtcgagcgcctgaacgacaaggcaatcaaggcgctgcgcgagtatttccagaaccag
gccctgcgcgccggcgcggaagctgtcgagcagcagctgcgcgacttcggcatgcactgg
caaagcccgcgcgcggagacctccggcgggttgttgctggcggggcagacctgggtgctg
accggcacgctggaagccatgtcgcgcgatgttgccaaagggcatctggaaagcctcggt
gccaaggtcgccggcagcgtgtcggccaagacccattgcgttgtcgcagggcccggtgcc
ggcagcaagttggccaaggccgagcagctgggtgtgaacgtctggaccgaacagcagctg
ctcgacatgctggccgagcatggcatcagcgcatga
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