Halomonas sp. SF2003: C8233_09260
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Entry
C8233_09260 CDS
T05423
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
haf
Halomonas sp. SF2003
Pathway
haf03030
DNA replication
haf03410
Base excision repair
haf03420
Nucleotide excision repair
haf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
haf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C8233_09260 (ligA)
03410 Base excision repair
C8233_09260 (ligA)
03420 Nucleotide excision repair
C8233_09260 (ligA)
03430 Mismatch repair
C8233_09260 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
haf03032
]
C8233_09260 (ligA)
03400 DNA repair and recombination proteins [BR:
haf03400
]
C8233_09260 (ligA)
Enzymes [BR:
haf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
C8233_09260 (ligA)
DNA replication proteins [BR:
haf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
C8233_09260 (ligA)
DNA repair and recombination proteins [BR:
haf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
C8233_09260 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C8233_09260 (ligA)
MMR (mismatch excision repair)
DNA ligase
C8233_09260 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
C8233_09260 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
5_3_exonuc
DUF7560
Big_3
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
AVV35489
LinkDB
All DBs
Position
complement(2280192..2282282)
Genome browser
AA seq
696 aa
AA seq
DB search
MEEVAQLHRELLEASHRYYVLDDPTLTDADYDTRLRRLEALEAEYPQLISSESPTQRVGA
APASGFEEVQHAVPMLSLNNAFDDDELRAFVQRAAKTLELGDAHDAGDELSFCCEPKLDG
LAVSLIYENGVLVQGVTRGDGRTGEGITTNLRTIRSIPLKLRGDDLPELLEVRGEVYMSH
AGFEALNARGRDEDGKVFANPRNAAAGSLRQLDSNIAASRPLEFCAYQVARVDDALLASE
AGQNHSGLMALLNDYGFRTSPQLEVVRGAQGIIDYTRRLGEQRDGLDHDIDGAVIKLDAL
RLQRELGFVARAPRWAIAYKYPAQEQETTLEGVDFQVGRTGALTPVARLAPVQVAGVVVS
NATLHNMDEVERLGVQIGDSVIIRRAGDVIPQVVRVASEGASREAIVLPDGCPVCGSEIE
RLEGEVVARCAGGLICAAQRKEALKHFSSRKALDVDGLGEKLIEQLIERELVKTPADLFH
LEAATLAELPRMGEKSAANLVASLDKSRNTTLARFIYALGIREVGEATAANLATHFGTLE
ALRAADQAALEAVEDVGPIVAAHIHTFFQQPTNNETLDALLACGLSWEEVEIGERPQPLA
GQTWVLTGSLDSMTRDEGKARLQALGAKVAGSVSKKTAGVVAGEAAGSKLEKAMQLGLTV
LDEETFVKRLAEWESGADAQQDNPQDSAQDSAGEDA
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggtcgcgcagctgcatcgcgagctgctcgaagccagccaccgctattacgtg
ctggatgatccgacgctgaccgatgccgactacgacacgcgcctgcgtcgtctcgaggcg
ctggaagccgaatatccccagctgatcagctcggaatcacccacccagcgtgtcggagcc
gcaccggccagcggctttgaagaagtgcagcatgcggtgccgatgctgtcgctcaacaac
gccttcgatgacgatgagctgcgtgccttcgtgcaacgtgcggcgaaaacgctggagctg
ggagacgctcatgacgcgggtgatgagctgagcttctgctgcgagcccaagctcgatggc
ctggccgtgtcgctcatctacgagaatggcgtgctggtgcaaggtgtgacgcgcggcgat
ggccgcaccggcgaaggcatcaccaccaatctgcgcaccatccgctcgatcccgctcaag
ctgcggggggatgatctgccggagctgctggaagtgcgcggcgaggtctacatgagccac
gctggcttcgaggcgctgaatgcgcgcggccgcgacgaggatggcaaggtgttcgccaac
ccgcgcaatgccgccgccggtagcctgcgccagctggattccaatatcgccgcctcgcgt
ccgctggaattctgcgcctatcaggtcgcgcgggtggatgatgcgctgctcgccagcgag
gccggccagaatcattccggtctgatggcgctgctcaacgactatggcttccgtaccagc
ccgcagcttgaggtggtgcgcggtgcccagggcatcatcgactacacccgccgcctcggc
gagcagcgtgatggcctcgatcacgacatcgatggcgcggtcatcaagctcgatgcactg
cgtctgcagcgtgaactgggcttcgtggcgcgcgcgccgcgctgggccatcgcctacaag
tacccggcgcaggagcaggaaaccaccctggaaggcgtcgattttcaggtcggacgcact
ggcgcgctgacaccggtcgcccggctggcaccggtgcaggtcgccggtgtggtggtgtcc
aacgccacactgcacaacatggatgaggtggagcgtctcggcgtgcagatcggtgacagc
gtcatcatccgccgcgccggcgacgtcatcccgcaggtggtgcgggtcgccagtgaaggt
gccagccgtgaagccatcgtgctgccggacggctgcccggtatgcggctccgagatcgag
cgcctcgaaggcgaggtggtggcacgctgcgcgggcggactgatctgcgccgcgcagcgc
aaggaagccctcaagcacttctccagccgcaaggcgctggatgtcgatggcctcggtgag
aagctgatcgagcagctgatcgagcgtgagctggtcaagacgccggcggacctgttccac
ctggaagctgccaccttggccgagctgccgcgcatgggtgagaagtccgccgccaatctg
gtcgcctcgctggacaagagtcgtaacaccaccctggcgcgcttcatctacgccctcggc
attcgggaagtcggtgaagccaccgccgcgaatctggccacgcacttcggcacgcttgaa
gcgttgcgtgcagcggatcaggccgcgctggaggcagtggaagatgtcggccccatcgtc
gccgcgcatatccataccttcttccagcagccgaccaacaacgagacactggatgcgttg
ctcgcctgcggtctgagctgggaagaggtcgagatcggtgagcgcccccagccgctggca
ggccagacctgggtgctgaccggcagcctcgacagcatgacgcgtgatgaaggcaaggca
cgtctgcaggcgctgggcgccaaggtggcgggcagtgtctcgaagaagaccgctggtgtg
gtcgccggcgaggcagcgggcagcaagctcgagaaagccatgcagctgggcctcacggtg
ctggacgaagagaccttcgtgaagcgcctggccgaatgggaatccggtgctgatgcacag
caggacaatccgcaagacagtgcgcaagacagcgcgggagaggatgcatga
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