Halomonas sp. GFAJ-1: BB497_00160
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Entry
BB497_00160 CDS
T05375
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hag
Halomonas sp. GFAJ-1
Pathway
hag03030
DNA replication
hag03410
Base excision repair
hag03420
Nucleotide excision repair
hag03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BB497_00160 (ligA)
03410 Base excision repair
BB497_00160 (ligA)
03420 Nucleotide excision repair
BB497_00160 (ligA)
03430 Mismatch repair
BB497_00160 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hag03032
]
BB497_00160 (ligA)
03400 DNA repair and recombination proteins [BR:
hag03400
]
BB497_00160 (ligA)
Enzymes [BR:
hag01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BB497_00160 (ligA)
DNA replication proteins [BR:
hag03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BB497_00160 (ligA)
DNA repair and recombination proteins [BR:
hag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BB497_00160 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BB497_00160 (ligA)
MMR (mismatch excision repair)
DNA ligase
BB497_00160 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BB497_00160 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
Nlig-Ia
DUF4796_N
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
AVI61228
LinkDB
All DBs
Position
complement(37733..39769)
Genome browser
AA seq
678 aa
AA seq
DB search
MSQTDPRLLEEISQLRADLDDANYRYYVLDEPKLTDADYDRKLQRLTQLEAEHPTLISPD
SPTQRVGAAPAEGFPEVAHAIPMLSLDNAFSRDDVVAFAERVAERLECDATEIEFSCEPK
LDGAAVSLVYEQGVLVIGATRGDGRTGEGITSNLRTLRSVPLKLIGKDLPELLEVRGEVI
MRHAGFEALNDRARDEDSKVFANPRNAAAGSLRQLDPRITATRPLEFHAYQAARLQPDMG
DTTHSALMARLSVLGFRTSAELSTMRGPQAVADYCEQLGEKRDQLGYDIDGVVIKVNDLR
HQRELGFVARAPRWAVAFKFPAQEEVTTLNDVEFQVGRTGAITPVARLEPVTVAGVTVSN
ATLHNADEITRLGVMIGDTVAIRRAGDVIPQVVRVDTDKRPAEARTITFPDHCPVCGSDI
ERLEGEAVARCSGGLYCAAQRKEALKHFASRKALDVDGLGEKLIEQLVDLDWVKTPADLF
HLTAGQLQSLPRMGEKSSTNLVNALDKAKNTTLARFIYALGIREVGEATAANVANHFGTL
QALQDADLTALEAVNDVGPIVAAHIHTFFRQPHNLETLQALLDAGITWQESEVTHGPTPL
EGQTWVLTGAMDTMTRDEGKARLQLLGAKVAGSVSKKTSCLVAGEAAGSKLAKAEQLGVE
VIDEATFIERLAAWEQSE
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagactgacccccgtttgcttgaagaaattagccagctccgcgccgacctagat
gatgctaattaccgctactacgtgttggacgaaccgaaactgaccgatgcggactatgac
cgaaagcttcagcgcttgacgcaactagaggctgagcaccctacgctgatatcgccagat
tcgcccacccagcgtgtaggtgctgcaccggcggagggctttcctgaagtcgcccatgct
attcccatgctctcattggataatgcttttagccgtgatgatgtggtggcctttgctgaa
cgggtcgccgagcgcttggagtgtgacgcaacagagattgagtttagctgcgagccaaag
cttgatggcgcggcggtatcgctagtgtatgagcagggcgtattagtgattggcgccacc
cgcggggatggacgcaccggggagggaattacctcgaacttgcgcaccctgcgttctgta
ccactaaaactgataggtaaagacctacccgagctgttggaagtgcgcggcgaggtgatt
atgcgccatgcgggttttgaggcgcttaatgaccgtgccagggatgaagacagtaaggtg
tttgccaacccgcgcaacgcagccgctggcagcttacgccagcttgacccgcgtattacc
gccactcgcccattagagtttcatgcttatcaagcggcacggttgcagcctgatatgggt
gacactacccacagtgcgctgatggcgcgactatcggtgcttgggtttcgcaccagcgcc
gagttaagcactatgcgcggcccccaggccgtcgctgactactgcgaacagctaggcgaa
aagcgtgatcaattgggctatgacattgatggcgttgtgattaaggtgaatgatcttcgt
caccagcgagagcttggctttgtggcccgtgccccgcgctgggcagtagcgtttaaattt
cctgcccaggaagaggtcaccacactgaatgatgtagagtttcaggtgggccgcaccggg
gctattacgccggtcgcgcggcttgagccggttacggttgccggcgtaacggtatccaac
gcgacactgcataacgccgatgagatcacccgtctgggtgtgatgattggcgataccgtc
gctattcgccgtgcaggggatgttattccccaggttgtgcgggtggataccgataagcga
ccggcagaagcacgcacgattacctttcctgaccactgcccagtgtgcggctcggacatt
gaacgcctggaaggcgaagcagttgcccgctgctcgggtgggctctactgcgctgcccag
cgcaaagaagcgctaaagcacttcgccagccgaaaggcgctggatgttgatgggctgggt
gaaaagcttattgagcagttagtggatctagactgggtgaaaaccccggcagacttgttt
cacctgacggcggggcaattgcaaagcctgccgcgcatgggcgagaagtcgtctactaac
ttggtgaacgcgctggataaggctaaaaatactaccttggcgcggtttatttacgcgttg
ggcattcgtgaggtgggcgaggcgacggcggctaacgtggccaaccattttggaaccttg
caagcgttgcaagacgctgacctcactgcgctagaagcagttaatgatgtggggcctatt
gtggcagcccatatccacaccttcttccgccagccccataacctagagacccttcaagcg
ctgctggatgccggtatcacctggcaagagagtgaagtgacccatgggcccactcccctt
gaagggcaaacctgggtgctgacaggtgccatggacaccatgacccgggacgaaggtaaa
gcgcggctgcaattgctgggggctaaagtggcgggcagtgtctcaaagaaaaccagctgc
ttagtggccggtgaggcagcaggcagcaagttagccaaagcagagcagctgggcgttgag
gtcattgatgaagcgacgtttattgagcgcctagctgcctgggagcagagcgaatga
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integrated database retrieval system
