Halomonas sp. GFAJ-1: BB497_03570
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Entry
BB497_03570 CDS
T05375
Name
(GenBank) DNA ligase B
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hag
Halomonas sp. GFAJ-1
Pathway
hag03030
DNA replication
hag03410
Base excision repair
hag03420
Nucleotide excision repair
hag03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BB497_03570
03410 Base excision repair
BB497_03570
03420 Nucleotide excision repair
BB497_03570
03430 Mismatch repair
BB497_03570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hag03032
]
BB497_03570
03400 DNA repair and recombination proteins [BR:
hag03400
]
BB497_03570
Enzymes [BR:
hag01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BB497_03570
DNA replication proteins [BR:
hag03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BB497_03570
DNA repair and recombination proteins [BR:
hag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BB497_03570
NER (nucleotide excision repair)
GGR (global genome repair) factors
BB497_03570
MMR (mismatch excision repair)
DNA ligase
BB497_03570
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BB497_03570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_OB
DNA_ligase_aden
HHH
HHH_5
HHH_2
DUF3701
RNA_ligase
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
AVI61844
UniProt:
H0IZC2
LinkDB
All DBs
Position
complement(789670..791355)
Genome browser
AA seq
561 aa
AA seq
DB search
MQKRIKAAKRWLLGVWLIGGAVYVQAQECPPWPREQLALETQALAEHVAIWDRAYHDQGK
SLIDDELYDQAVDRLASWQACLGDKTPHRPLTRVTRSGGTLNHPFAQTGLNKADDAGVRR
FTSRRENLWIQPKVDGVAVTLRYQEGELIEAVSRGDGERGQDWTARAHQLPAVPNLLPIP
LSMVLQGELYWVLNDHVQSQNPASGARGAVAGAMAQQSPSPDTLNRVGLFVWDWPDGPTD
MAVRLAELTALGFDTANYTHSLNEQRDAAYWRDAWFNGALPFATDGVVLKQAERPGVQRW
SSSPPEWAIAWKYPAQQALAQVRGVEFRVGRTGRVTPLLWLYPVTLEGKRISRVSLNSLE
RWQAWDIRPGDQVAVTLAGLTIPQVTDVVWQARERAALSAPSPERYHLLSCFTLTSGCEA
QLLARLSFLSDQLGMLGVGEGTWQALIDAGVVTDLLGWMEATPTQLQQAHGIGAVRAAAL
EAQFRAARAASYAAWLSALGMPPGGSAQLGNWQTLEGYSRANWQAIPGVGPVRADALAAF
FSHPEVQRMALTLQQSDIAGF
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaaaggataaaggcggctaaacgatggctgctgggggtgtggctaataggcggc
gctgtatacgtccaggcacaagagtgcccaccgtggccaagggagcagctggcgcttgag
acccaggcgttggcggagcacgtcgcgatatgggaccgcgcttaccatgaccagggcaaa
tcacttattgatgacgagctctacgaccaagcggtggaccgcttagccagctggcaagct
tgcctgggagataaaacgccccaccgcccgcttaccagagtgacccgcagtggcggcacc
ttgaaccacccgttcgctcaaaccggcttgaataaagccgacgatgccggcgtgcgacgc
tttaccagccgccgggagaacctgtggatccagcctaaggtagatggcgtggcggtcaca
ctacgctatcaagagggtgagttaatcgaagccgtgagccgtggggacggcgagcgtggt
caagactggacggcccgcgctcaccagctacctgctgtgcccaatttgctgccaatacca
ctgtcgatggtgcttcaaggcgagctttattgggtgttgaatgaccacgttcagtcacaa
aaccctgcatctggtgcccggggcgccgtggcgggagcgatggcgcaacaatcacctagt
cccgatactttgaaccgagtcgggctatttgtatgggattggccggatggccccaccgat
atggctgtaaggcttgccgagcttactgcgctgggctttgatactgccaactacactcac
tccttaaacgaacagcgcgacgccgcttattggcgagatgcgtggtttaacggtgcgcta
ccctttgctaccgatggcgttgtgctcaaacaagcggagcgtcctggcgtgcagcgttgg
agttcatcgccgccagagtgggcaatcgcctggaagtacccagctcaacaggcgttggct
caggtacgcggcgtggaatttcgcgtaggccgtaccgggcgcgtgacaccactgctgtgg
ctctacccagttaccttggaaggaaagcgcatcagccgcgtttcgttaaactcgttagag
cgctggcaagcgtgggatataaggccgggtgatcaagtggcagtaacgctagcagggctg
accatcccccaggtaacggacgtcgtctggcaagcgcgtgagcgggcggcgttaagcgcc
ccctcgccggagcgctaccatttgctgagttgctttacgttaacgtcgggctgtgaagca
cagctactggcaaggcttagctttttaagcgatcagttgggcatgctaggggtgggagaa
ggcacttggcaggcgctcatcgacgcaggcgttgttacggatttactgggatggatggaa
gcgacacctacccagctacaacaggcccacggtattggagcagtgcgtgctgctgctctc
gaagcgcaattcagagctgccagggctgcttcttacgcagcatggctgtcagcgctgggc
atgccgcccggcggtagtgcccaactgggaaattggcaaaccctggaaggctattcacgg
gcgaattggcaggctattccgggtgtcggcccagttcgagccgacgcgctagcagcgttt
ttcagtcatccggaggtgcagcgcatggcgctaacactgcagcagtcggacattgcgggt
ttttaa
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