KEGG   Halophilic archaeon: Halar_2916
Entry
Halar_2916        CDS       T01603                                 
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
hah  Halophilic archaeon
Pathway
hah03030  DNA replication
hah03410  Base excision repair
hah03420  Nucleotide excision repair
hah03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:hah00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Halar_2916
   03410 Base excision repair
    Halar_2916
   03420 Nucleotide excision repair
    Halar_2916
   03430 Mismatch repair
    Halar_2916
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hah03032]
    Halar_2916
   03400 DNA repair and recombination proteins [BR:hah03400]
    Halar_2916
Enzymes [BR:hah01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     Halar_2916
DNA replication proteins [BR:hah03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     Halar_2916
DNA repair and recombination proteins [BR:hah03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     Halar_2916
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Halar_2916
   MMR (mismatch excision repair)
    DNA ligase
     Halar_2916
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      Halar_2916
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_5 HHH_2 BRCT HHH Nlig-Ia DNA_ligase_ZBD 5_3_exonuc DUF4796_N PTCB-BRCT DUF7575 RUBY_RBDX DZR_2
Other DBs
NCBI-ProteinID: AEN06546
LinkDB
Position
2119941..2122112
AA seq 723 aa
MTDAPEDTPDVRDPDTDFVLVDALDAATAREQAEHLRAAIREHDYRYYVENDPVIADRTY
DELFKRLETLEETFDLDCENSPTRRVGGEPVDELETVDLVVPLLSLDSSGDAADVRGFDD
RVHRELRNAGVEDEVSYVCEPKFDGLSIEITYLDGVYERAATRGDGERGDDVTENVRTIS
SVPQRLRGDPPAVLVVRGEIFMPLDAFQAHNRERVEHGEDAFANPRNAAAGSLRQLDPAV
TAERPLDCFFYDVLWASEEPADSVAAVVEGAQFDGSASAGAAKMEGLETHWAEHQQLPAW
GLQVNDRHRLVDDIEAAIDYRDELLEGRADLDYEIDGTVLKLNGRAQCRTLGTTARHYRW
AYAYKFPARREETRIADIVIQVGRTGRLTPVALLDPVDVGGVTVSRASLHNQEEIAEKGV
GVGDMVKVERAGDVIPYVSEVVESNSVGHFEFPEQCPVCGSEVEADGPLRFCTGGLSCPA
QLKRAVEHYASDSGLDLEGLGEKAAAQLVEAGLIKNSVADLYHLTAEQLTALEGWGEKSA
ENLLAELKASKEPDLGAFLSALGIPGVGPTMADDLAAAFGDIDAVLAADEADIREVEGFG
PTVAGHVAEFVANERNLAVVRRLREAGVEPESASESAAGEELGGLTFVFTGSLELTRSDA
QDLVEAHGANATGSVSSNTDFLVAGENPGQSKRDDAAANDVPVLDEAAFADLLAEYDIDY
PPA
NT seq 2172 nt   +upstreamnt  +downstreamnt
atgaccgacgcgcccgaggacacccccgacgttcgggacccggacaccgatttcgtgctg
gtggatgcgttggacgcggctacggcccgtgagcaggccgagcacctccgcgcggccatc
cgggagcacgactaccggtactacgtcgagaacgaccccgtcatcgccgaccggacctac
gacgagctgttcaagcgcctcgaaacgctggaggagacgttcgatctggattgtgagaac
tcacccacccgccgcgttggcggcgagcctgtggacgaactcgagacggtcgacctcgtg
gtcccgctcctgtccctcgactcctcgggcgacgccgcggacgtgcgggggttcgacgac
agagtgcaccgagagcttcggaacgccggcgtcgaagacgaggtttcctacgtctgtgag
cccaagttcgacgggctctccatcgagatcacgtatctcgacggtgtgtacgagcgcgcg
gccacccgcggcgacggcgagcgcggcgacgacgtgaccgagaacgtccgcacgatcagc
tccgtgccccagcgcctgcgcggtgacccgcctgcggtgctcgtcgtccgtggggagata
ttcatgccgttggacgcgtttcaggcccacaaccgcgagcgcgtcgagcacggcgaggac
gccttcgccaacccccgcaacgccgccgccggcagtctccgacaactggaccctgctgtc
accgccgagcgcccgctcgactgtttcttctacgacgtgctctgggccagcgaggaacct
gccgacagcgttgcagcggtggtcgaaggtgcccaattcgacggtagtgcctccgctggc
gcagcgaaaatggaggggctggagacgcactgggccgagcaccaacagctcccggcgtgg
gggctgcaggtgaacgaccgccaccggctcgtcgacgacatcgaggctgccattgactac
cgcgacgaactgctcgagggacgggcggatctggactacgaaatcgacggcacggtgctg
aaactcaacggtcgtgcgcagtgccgcacgctcgggaccacggcacggcactaccgctgg
gcctacgcctacaagttccccgcccggcgcgaggagacccgcatcgccgacatcgtgatt
caggtcggccggaccgggcggctcaccccggtcgcgctgctggaccctgtcgacgttggt
ggcgtaaccgtctcgcgggccagcctccacaatcaggaggaaatcgcggagaaaggcgtc
ggcgtcggcgacatggtgaaagtcgagcgggcgggtgacgtgattccgtacgtctcggag
gtggtggagtcgaactcggtcggccacttcgagttccccgagcagtgtccggtctgtggc
agcgaggttgaggcggacggcccgctccggttctgtacagggggtctctcctgtccggcc
cagctgaaacgcgctgtcgaacactacgccagcgacagcgggctggatctcgaggggctg
ggcgagaaagcggccgcacagttggtcgaggcaggtctcatcaagaactccgtcgccgac
ctctaccacctcaccgccgagcaactgaccgcgctggaggggtggggtgagaaaagcgct
gagaacctcctcgcggaactgaaggcgtcgaaggaacccgacctcggtgcgttcctctcc
gcgttggggattcccggcgtggggccgacgatggccgacgacctcgcggcggcgttcggc
gatatcgacgccgtgctggctgcagacgaggcagacatccgcgaggtcgaggggttcgga
ccgaccgtcgcgggccacgtcgccgagttcgtcgccaacgagcgcaacctggcggtggtc
cgccggctccgcgaggccggcgtcgagccagaatccgcgtccgaatcggcagcaggcgaa
gaactcggcgggctcacgttcgtcttcaccgggtccctcgagttgacgcgaagcgacgcc
caggatctcgtggaggcccacggcgcgaacgcgacggggtcggtctctagcaatacggat
ttcctcgttgcaggggagaaccctggccagtccaagcgtgatgacgccgcagccaacgac
gtgccggtgctggatgaggcggccttcgccgacctgctggccgagtacgacatcgactac
ccgccagcctga

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