Hahella sp. KA22: ENC22_09200
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Entry
ENC22_09200 CDS
T05793
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hahe
Hahella sp. KA22
Pathway
hahe03030
DNA replication
hahe03410
Base excision repair
hahe03420
Nucleotide excision repair
hahe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hahe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ENC22_09200 (ligA)
03410 Base excision repair
ENC22_09200 (ligA)
03420 Nucleotide excision repair
ENC22_09200 (ligA)
03430 Mismatch repair
ENC22_09200 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hahe03032
]
ENC22_09200 (ligA)
03400 DNA repair and recombination proteins [BR:
hahe03400
]
ENC22_09200 (ligA)
Enzymes [BR:
hahe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ENC22_09200 (ligA)
DNA replication proteins [BR:
hahe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ENC22_09200 (ligA)
DNA repair and recombination proteins [BR:
hahe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ENC22_09200 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ENC22_09200 (ligA)
MMR (mismatch excision repair)
DNA ligase
ENC22_09200 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ENC22_09200 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
SAM_2
Motif
Other DBs
NCBI-ProteinID:
AZZ91371
LinkDB
All DBs
Position
2048034..2050085
Genome browser
AA seq
683 aa
AA seq
DB search
MSEVPAAIQEELNTLRETINDHNYRYYTLDDPSIPDAEYDRLMRRLREIEAEFPQTITPD
SPTQRVGAAPANGFETVSHRLPMLSLDNAFEEQDLLDFDRRVRERLKEAEDARIDYCCEP
KLDGIAISLLYRDGYLVRGVTRGDGSAGEDITANVKTVKNIPLKLRGEGYPAELEVRGEI
YLPKAAFDAINKDAAAKGEKTFVNPRNAAAGSLRQLDPRITAKRALEMCCYSVGYFEGEL
PGTQHDILTQLQQWGLRINSQMKLASGAQECLDYYRHIMNVRNQLPYEIDGVVFKVNRID
LQQELGFVSRAPRWAIAHKFPAHEEMTELLAVDFQVGRTGAVTPVARLKPVFVGGVTVSN
ATLHNMDEIRRLDVHIGDTVIIRRAGDVIPQVVSVVQDRRPENAVPVDRPEHCPVCGSDV
LQLESEAVARCSGGLYCSAQRKEAIKHFASRKAMDIDGLGDRLVELLVEKELIDSPASLY
SLKAPDVAGLERMGDKSAQNLINAIEVSKQTTFARFIYALGIREVGEATAKLLAQHFPTL
ELLKQATEEDLVETPDIGPISAGHIRSFFQQEHNLETIDALLNQGVSWPEVVVRSTETLP
LSGQTAVVTGTLAEYSRDEAKDLLTRLGAKVSGSVSAKTGFVVAGEKAGSKLTKAQDLGV
KVLDEGAFKQLLEEHQAHLGGDA
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgtcggaagtccctgccgccattcaggaagagctgaatacgcttcgcgaaaccatcaac
gatcataactaccgttattacacactggatgatccctcgattcccgatgcggagtacgac
cgactaatgcgtcgactgcgtgaaatcgaggcggaatttccgcaaacgattacgccggac
tcgccgacgcaacgggtgggcgccgcgcctgcgaatggctttgagaccgtatcccaccgt
ctgcccatgctgtctttagataatgcgtttgaagagcaggatctgctggacttcgatcgt
cgcgtgcgtgagcggctcaaggaagcggaagacgcgcgcatcgactactgttgcgaaccg
aagctggacggcatcgccatcagtctgttgtatcgcgatggatacctggtgcgtggcgtg
actcgtggggatggctccgcgggtgaagacattaccgccaatgttaagacggtaaaaaat
attccgcttaaattgcgtggggaaggctatcccgcagaattggaagtgcgcggtgaaatt
tatctgcccaaggccgccttcgacgccataaacaaagacgcggcggcgaagggagagaaa
acgttcgttaacccgcgcaacgccgccgcgggaagtctgcgccagcttgatccgcgcatc
accgccaaacgggcgttggaaatgtgttgctacagcgttgggtattttgaaggtgaattg
ccggggacgcagcacgatattctcacgcaattgcagcagtggggactgaggatcaacagc
cagatgaagttggcgtcaggggcgcaggagtgcctggattattatcgccatatcatgaac
gttcgtaaccaattgccgtacgaaatcgatggcgttgtgttcaaggttaaccgcattgat
ctgcagcaggagctgggcttcgtctcgcgagcgccgcgctgggctatcgcgcataagttc
cccgcccatgaggaaatgaccgagctgctggcggtggatttccaggtcggcaggacgggc
gccgtaaccccggtggcgcgcttaaagccggtgttcgtcggcggcgtcacggtcagtaac
gctaccctgcacaatatggatgagattcgtcgcctggatgtgcatattggcgatacggtg
atcattcgtcgtgcgggagatgtcattccccaggttgttagcgtggtgcaggatcgtcgc
ccggaaaacgccgtcccggtggatcgtcccgaacactgtccggtttgcggctctgacgtg
ctgcaactggagagcgaagcggtggcgcgttgctctggcgggctctattgctccgctcag
cggaaagaggcgatcaagcacttcgcatcccgcaaagccatggatatcgacggcctggga
gaccgactggttgagctgctggtggaaaaagagttaatcgactctcccgccagcctgtat
tcgctgaaagcccctgatgtggcgggactggagcgcatgggcgacaagtcggcgcaaaat
ctgattaatgcgattgaggtttccaagcagaccacattcgcgcgctttatctatgccttg
ggcatccgggaagtgggggaagccacggccaagttgctggcgcagcacttcccaactctg
gagctgctgaaacaggccaccgaagaggatttggtggagacgccggatatcggtcctatc
agcgcgggccatattcgttccttctttcaacaggaacacaatctggaaacgattgacgcg
ctgctgaatcagggcgtgagctggcctgaagtggtcgtacgcagcacggagacgctgccg
ttatccggtcagactgccgtggtgaccggcacgcttgcggaatacagccgcgacgaggcg
aaggatttattaacccgtctcggcgccaaggtgtctggtagtgtgtccgccaaaaccggt
tttgtggtggcgggagaaaaggcgggctccaaactcaccaaggcgcaggatcttggcgtg
aaggtgctggatgaaggcgcattcaagcagctactggaagaacatcaggcgcatttgggc
ggcgacgcctga
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