Hahella sp. HNIBRBA332: O5O45_04065
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Entry
O5O45_04065 CDS
T09430
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hahh
Hahella sp. HNIBRBA332
Pathway
hahh03030
DNA replication
hahh03410
Base excision repair
hahh03420
Nucleotide excision repair
hahh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hahh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
O5O45_04065 (ligA)
03410 Base excision repair
O5O45_04065 (ligA)
03420 Nucleotide excision repair
O5O45_04065 (ligA)
03430 Mismatch repair
O5O45_04065 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hahh03032
]
O5O45_04065 (ligA)
03400 DNA repair and recombination proteins [BR:
hahh03400
]
O5O45_04065 (ligA)
Enzymes [BR:
hahh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
O5O45_04065 (ligA)
DNA replication proteins [BR:
hahh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
O5O45_04065 (ligA)
DNA repair and recombination proteins [BR:
hahh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
O5O45_04065 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
O5O45_04065 (ligA)
MMR (mismatch excision repair)
DNA ligase
O5O45_04065 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
O5O45_04065 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
WLQ15106
LinkDB
All DBs
Position
856308..858359
Genome browser
AA seq
683 aa
AA seq
DB search
MSEVPAAIQEELNTLRETINDHNYRYYTLDDPSIPDAEYDRLMRRLREIETEFPQTITPD
SPTQRVGAAPADGFETVSHRLPMLSLDNAFEEQDLLDFDRRVRERLKEAEDVRIDYCCEP
KLDGIAISLLYRDGYLVRGVTRGDGSAGEDITANVKTVKNIPLKLRGEGYPAELEVRGEI
YLPKAAFDAINKDAAAKGEKTFVNPRNAAAGSLRQLDPRITARRALEMCCYSVGYFEGEL
PGTQHDILNQLQQWGLKINSQMKLASGAQECLDYYRHIMNVRNQLPYEIDGVVFKVNRID
LQQELGFVSRAPRWAIAHKFPAHEEMTELLAVDFQVGRTGAVTPVARLKPVFVGGVTVSN
ATLHNMDEIRRLDVHVGDTVIIRRAGDVIPQVVSVVQDRRPENAVPVERPEHCPVCGSDV
LQLEGEAVARCSGGLYCSAQRKEAIKHFASRKAMDIDGLGDRLVELLVEKELIDSPASLY
SLKAPDVAGLERMGEKSAQNLINAIEVSKQTTFARFIYALGIREVGEATAKVLAQHFPTL
DLLKQATEEDLVAAPDIGPISAGHIRSFFQQEHNLETIDALLRQGVSWPEVVVRNTETLP
LSGQTAVVTGTLADYSRDEAKDLLIRLGAKVSGSVSAKTGFVVAGEKAGSKLTKAQDLGV
KVLDEDAFKQLLEEHQAHLGGDA
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgtcggaagtccctgccgccattcaggaagagctgaatacgcttcgcgaaaccatcaac
gatcataattaccgttattacacgctggatgatccctcgattcccgatgcggagtacgac
cgtttaatgcgtcgtctgcgtgaaatcgagacggagtttccccaaacgattacgccggac
tcgccgactcagcgcgtgggcgctgcgcctgcggatggcttcgagacagtgtcccatcgc
ctgcccatgctgtccttggataacgcgttcgaagagcaggatctgctggacttcgatcgt
cgcgtgcgcgagcgccttaaggaagcggaagacgtgcgcattgattactgctgcgaaccg
aaactggacggcatcgctatcagtttgttgtaccgcgatggttatctggtgcgcggcgtt
acgcgcggcgacggctccgccggcgaagatatcaccgccaacgtgaagacggtaaagaat
atcccgcttaagttgcgaggggagggatatcccgcggaattggaagttcgcggtgaaatt
tatctgcccaaggccgccttcgacgccatcaacaaagacgcggcggcgaagggcgagaaa
acgttcgttaacccgcgcaacgcggcggcgggaagtctgcgccagcttgatccgcgcatc
accgccaggcgggcgttggaaatgtgttgctacagcgtaggctatttcgaaggcgaattg
ccggggacccagcacgatattctcaatcagctgcagcagtggggcctgaagatcaatagc
cagatgaagttggcgtcaggggcgcaggagtgcctggattactaccgtcatatcatgaac
gttcgtaaccaattgccatacgaaattgatggcgtggtgttcaaggttaaccgtattgat
ctgcagcaggagctggggttcgtttcgcgggcgccgcgttgggctatcgcgcataaattc
cccgcccacgaggaaatgaccgagttgctggcggtggacttccaggttggcagaaccggc
gccgtgacgccagtggcgcgcttgaagccggtattcgtcggcggcgtcacggtcagcaac
gctaccttgcataacatggatgaaattcgccgcttggacgtgcatgtgggcgatacggtc
atcattcgccgcgcgggagatgtcattccgcaggtggttagcgtggtgcaggatcgtcgc
ccggaaaacgctgtaccggtggagcgtcccgagcactgtccagtttgcggctccgatgtg
ctgcaactggagggcgaagcggtggcgcgttgctccggtgggctctactgctctgcgcag
cgtaaggaggcgatcaagcacttcgcatcccgcaaagctatggatatcgacggcctgggc
gaccgactggttgagctgctggtggagaaagaattaatcgattctcccgccagtttgtat
tctctaaaagcgccggatgtggcggggctggagcgcatgggcgaaaagtctgcgcaaaat
ctcattaatgctattgaggtttccaagcaaaccacttttgctcgctttatctatgcgttg
ggcattcgggaagtgggggaagccacggccaaggtgctggcgcagcacttcccaactctg
gatctgctgaagcaggccaccgaagaagacttggtggcggcgccggatatcggtcctatc
agtgcggggcatattcgctccttcttccagcaagagcacaatctggaaaccattgatgcg
ctattgaggcagggcgtgagctggcctgaagtggtcgtgcgcaatacagagacgctgccg
ctatccgggcaaaccgctgtagtgacgggcacgcttgcggattacagccgcgatgaggcg
aaggatctattgatccgtctcggcgccaaggtgtccggcagcgtgtccgccaaaaccggt
tttgtggtggcgggggaaaaggcgggctccaaacttactaaggcgcaggatcttggtgtg
aaagtgctggatgaagacgcattcaagcaactgttggaagagcatcaagcgcatttgggc
ggcgacgcctga
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