Hemitrygon akajei (red stingray): 140725115 Help Entry 140725115         CDS       T11019                                  Symbol thbs1b Name (RefSeq) thrombospondin-1   KO K16857   thrombospondin 1 Organism haka  Hemitrygon akajei (red stingray) Pathway haka04115   p53 signaling pathway haka04145   Phagosome haka04148   Efferocytosis haka04350   TGF-beta signaling pathway haka04510   Focal adhesion haka04512   ECM-receptor interaction haka04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:haka00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     140725115 (thbs1b)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     140725115 (thbs1b)  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     140725115 (thbs1b)    04148 Efferocytosis     140725115 (thbs1b)   09143 Cell growth and death    04115 p53 signaling pathway     140725115 (thbs1b)   09144 Cellular community - eukaryotes    04510 Focal adhesion     140725115 (thbs1b)   09142 Cell motility    04820 Cytoskeleton in muscle cells     140725115 (thbs1b)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:haka04131]     140725115 (thbs1b)   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:haka00536]     140725115 (thbs1b) Membrane trafficking [BR:haka04131]  Endocytosis   Phagocytosis    Opsonins     140725115 (thbs1b) Glycosaminoglycan binding proteins [BR:haka00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    140725115 (thbs1b) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC VWC2L_2nd TSP1_ADAMTS cEGF EGF_3 TSP1_CFP_C EGF Laminin_G_3 TSP1_CCN Laminin_G_2 Motif Other DBs NCBI-GeneID:  140725115 NCBI-ProteinID:  XP_072896244 LinkDB All DBs Position 3:75165701..75180722 Genome browser AA seq 1168 aa AA seqDB search MKLLQGLFLLLMIVACSAERIQDTGADDVFDMFDVTGLTRKNVGVHMVKGPESNSPAYRI LNPDIISPVSDHRFRDLIDHIQQERGFIFLATLRQMKKTRGTLVAIDNLDGTRLFEILSN GKANTLDLTITIEGKQSMVSITDAHLANARWKNLTLFVQEDVATLYVGCDKVNQVELEEA IHKVLKYGDYKLRLAKGGKGLRNNFQGVLQNVRFVFGTNIETILLNKGCYSSTRGIVSLP IGGSESPAIRTDFYGHKTKDLQTICGISCEELSGMFTELQALRTMVTQLVDKVQKLTADN ELIARAIGIRQIGGCVHNGMTYKDKDQWKVDNCTDCTCQSSVTFCQRISCPTVSCADAVV PDGECCARCPSILNESEAGWSPWSEWTHCSVTCGIGTQQRGRSCDRINSDCHGTSVQTRS CHLEECDKRFKQDGGWSYWSPWSSCSVSCGTGVITRIRLCNSPMPQMGGKECVGEKRETE KCEQAPCPIDGNWGIWSPWNSCTVTCGGGIQKRTRLCDSPAPKHGGKRCVGEPRETQICN KLECPIDGCLSNPCFAQSKCTSFPDGSWKCGPCPSGYRGDGIHCEDINECVEVPDTCYQT NGENRCENTEPGYNCLPCPARYTGNQPFGKGIEEATKNKQVCEPRNPCKDRTNNCNKHAK CIYLGVFSEQMYRCECKPGFAGNGIICGEDTDLDGWPNKDLTCVANATYHCKKDNCPFLP NSGQEDHDSDGIGDACDNDDDNDGIPDERDNCPFLFNPVQYDYDRDDVGDRCDNCPYNNN PDQTDTDGNGEGDACAIDIDGDGILNEKDNCPYVYNVDQRDTDLDGIGDQCDNCPLEHNP DQTDSDSDLVGDKCDNNKDIDEDGHQNNLDNCPYVANSNQADHDKDGRGDACDHDDDNDG IPDDRDNCRLKFNPNQTDSDGDGRGDACKDDFDGDSIPDIYDVCPENFEITETDFRKFQM VPLDPKGTSQNDPNWVVRHKGKELVQTVNCDPGIAVGYDEFNAVDFSGTFFINTERDDDY AGFVFGYQSSGRFYVVMWKQITQTYWHDTPTKAQGYAGLSIKVVNSTTGPGEHLRNALWH TGNTAGQVKTLWHDPQNIGWKDKAAYRWQLTHRPKTGFIRVVMYEGRKIMADSGAIYDKT YAGGRLGLFVFSQEMVYFSDLKYECRDS NT seq 3507 nt NT seq  +upstreamnt  +downstreamnt atgaagcttctacaaggactcttcctactgttaatgatcgttgcctgttcggcagagagg atccaagatacaggagcagatgatgtgttcgacatgttcgatgtcactgggctcacacgc aaaaacgttggggtgcacatggtcaagggtcccgaatctaacagtccagcctataggatc ctcaaccccgatatcatcagcccggtttcagatcacaggttcagggatctgatcgaccac attcagcaggagaggggattcatcttcctcgccaccctgcgccagatgaagaagacccgg ggcactctggtggctattgacaatctggatggcacccgtctcttcgagatcctgtccaat ggaaaagccaacaccctcgacttaactatcaccatcgagggcaagcagagcatggtgtca atcaccgatgcccacctggccaatgcccgctggaagaacctgaccttgttcgtgcaagag gacgtggccacgctgtatgtgggatgtgataaggtcaaccaagtggaactggaggaagcc atccacaaggtgttgaaatacggcgactacaaactgagactggccaaaggagggaaagga ctccgcaataacttccagggagtcctacagaatgtccgttttgtgtttgggaccaacata gaaacgatactgctgaacaagggctgctacagttccacacgtggcatcgtgtctttaccg attggaggctctgaaagcccagccatccggaccgacttctacggtcacaaaaccaaggac cttcagacgatatgcggcatatcctgcgaggaactatccggcatgttcactgagcttcaa gctctcaggaccatggttacccagttggttgacaaggttcagaaattgactgcagataac gaactgattgcaagagccattgggatcagacaaattggagggtgtgttcataatggcatg acctacaaagacaaggatcagtggaaagtggacaactgcactgactgcacttgccagtca tctgtcacgttctgccaaaggatttcctgccctactgtatcctgcgcagatgctgtggtt ccggatggggaatgctgtgcccgatgcccatcaattctgaatgaatccgaggctggctgg tctccgtggtctgaatggactcattgttctgtcacctgtggaattggaactcagcagcga ggtcggtcctgtgatcggattaatagcgactgtcatgggacctctgttcagactcgcagt tgccatttggaagaatgtgacaagagattcaagcaagatggtggttggagttactggtct ccttggtcatcttgttctgtgagctgtggtactggagtgatcactcgaatccgcctgtgt aactcaccaatgccacaaatgggtggcaaagaatgtgtgggagagaagagggaaaccgaa aaatgtgaacaggctccatgcccaattgacggaaactggggtatctggtcaccatggaac tcttgtactgtcacctgtggaggaggaatacagaaacgcacgcgtctttgtgacagtccg gcacccaagcacggaggcaagaggtgcgtgggtgaacctcgggagacccagatttgcaac aaactggagtgtccaattgatggatgtttatcaaatccatgctttgctcagagcaagtgt accagcttcccagacggatcctggaagtgtggtccatgcccgtctggttacagaggagat ggcattcactgtgaggacattaatgagtgcgtggaagtgcctgacacctgctatcaaacc aatggggagaacaggtgtgaaaacacagagcccggttacaactgcctgccctgtccagca cgatacactggaaatcaaccatttggcaaaggcatcgaggaggctacaaagaacaagcag gtctgtgagccacgcaatccctgcaaagataggacaaacaactgcaataaacatgccaag tgtatttaccttggtgtcttcagtgagcagatgtaccgctgtgaatgtaagcctggtttt gctggcaacggcatcatctgtggagaagatactgacctggacggttggccaaataaagat ctcacctgcgttgccaatgcaacttaccactgcaaaaaagataactgcccatttttgcct aactctggacaagaagaccatgatagcgacggaattggagatgcctgtgataacgatgat gataatgatggcattccagatgagagggacaattgccctttcctgtttaaccctgtgcaa tatgattacgaccgggatgatgtgggtgatcgttgtgacaactgcccttacaacaataac cctgaccagacagacactgatggaaatggggaaggagatgcctgtgccattgacattgat ggagatggtattttaaatgagaaggacaactgtccttatgtgtacaatgttgatcagagg gacacggatttagatggcattggtgatcagtgtgacaactgtccactagaacacaatcca gatcaaactgattcggactctgacctcgtgggagacaaatgtgacaacaacaaagatatc gatgaggatggtcatcagaataatctggacaactgcccctacgttgctaattccaaccag gcagaccatgacaaggatggcaggggtgacgcctgcgatcatgatgatgataatgatggt attcctgatgacagggataactgtcgattgaaattcaaccccaaccaaactgactctgat ggtgatggtcgaggcgatgcttgtaaggatgattttgatggagacagtatcccagatatc tatgatgtttgtcctgaaaacttcgaaatcactgagaccgatttccgcaagttccaaatg gtaccactggatccaaagggaacatcccagaatgaccccaattgggttgtgcggcacaag ggcaaagagttggtgcagacagttaactgtgatcctggcattgctgtaggttatgatgaa tttaatgccgttgacttcagtggaacattcttcatcaatactgaacgtgatgatgattat gctggatttgtttttggataccagtccagtggccgcttctatgtggtaatgtggaaacag atcacacaaacctactggcacgatacaccaaccaaagctcagggatatgctggactctcc atcaaagtggtgaactctacaactggaccaggagagcacttgcgtaatgcactttggcac actgggaatacagcaggacaagttaaaactttgtggcatgatcctcaaaacattggctgg aaggacaaggcagcttacagatggcaattaacccacaggccaaagactggatttatcaga gttgtaatgtatgaagggaggaagattatggcagactctggagcaatctatgacaagacc tacgctggaggacggttgggtctcttcgtcttctctcaagaaatggtttacttctctgat cttaaatatgaatgtagagattcttaa

DBGET integrated database retrieval system