Hemitrygon akajei (red stingray): 140729435 Help Entry 140729435         CDS       T11019                                  Symbol traf6 Name (RefSeq) TNF receptor-associated factor 6   KO K03175   TNF receptor-associated factor 6 [EC:2.3.2.27] Organism haka  Hemitrygon akajei (red stingray) Pathway haka04010   MAPK signaling pathway haka04120   Ubiquitin mediated proteolysis haka04140   Autophagy - animal haka04144   Endocytosis haka04517   IgSF CAM signaling haka04620   Toll-like receptor signaling pathway haka04621   NOD-like receptor signaling pathway haka04622   RIG-I-like receptor signaling pathway haka05132   Salmonella infection haka05168   Herpes simplex virus 1 infection Brite KEGG Orthology (KO) [BR:haka00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     140729435 (traf6)  09130 Environmental Information Processing   09132 Signal transduction    04010 MAPK signaling pathway     140729435 (traf6)   09133 Signaling molecules and interaction    04517 IgSF CAM signaling     140729435 (traf6)  09140 Cellular Processes   09141 Transport and catabolism    04144 Endocytosis     140729435 (traf6)    04140 Autophagy - animal     140729435 (traf6)  09150 Organismal Systems   09151 Immune system    04620 Toll-like receptor signaling pathway     140729435 (traf6)    04621 NOD-like receptor signaling pathway     140729435 (traf6)    04622 RIG-I-like receptor signaling pathway     140729435 (traf6)  09160 Human Diseases   09172 Infectious disease: viral    05168 Herpes simplex virus 1 infection     140729435 (traf6)   09171 Infectious disease: bacterial    05132 Salmonella infection     140729435 (traf6)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:haka04131]     140729435 (traf6)    04121 Ubiquitin system [BR:haka04121]     140729435 (traf6) Enzymes [BR:haka01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      140729435 (traf6) Membrane trafficking [BR:haka04131]  Endocytosis   Clathrin-mediated endocytosis    Ubiquitin E3 ligases     140729435 (traf6) Ubiquitin system [BR:haka04121]  Ubiquitin ligases (E3)   Single Ring-finger type E3    TRAF proteins     140729435 (traf6) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  TRAF-mep_MATH MATH_2 zf-TRAF zf-C3HC4 zf-C3HC4_2 zf-TRAF_2 zf-RING_UBOX zf-RING_2 zf-C3HC4_4 zf-C3HC4_3 TRAF6_Z2 Sina_ZnF SlyX zf-RING_5 DUF16 CCDC18_1st TRAF3_RING Tropomyosin RING_XB3-XBAT31 U-box ATG16 CENP-F_leu_zip Cortex-I_coil zf-RING_11 LEKR1 Zn_ribbon_ACC DM TMF_DNA_bd DUF7310 DUF8221 EXOC6_Sec15_N Motif Other DBs NCBI-GeneID:  140729435 NCBI-ProteinID:  XP_072905266 LinkDB All DBs Position 6:122636695..122680273 Genome browser AA seq 554 aa AA seqDB search MVDCDSNRDPMFQSSCCSVSNSMRDNCSNHGQYSHTVFEEMQGYDVEFDPPLENKYECPI CLMALREAVQTPCGHRFCRVCIVKSIRDAGHKCPVDNEMLLEAQLFPDNFAKREILSLTV KCPNKGCYQKMELRHLEDHQELCEYAFVDCPQCESVLWRKELQQHVDSDCPKRPVACENC AILMPYLEKKDHDQSCPLANITCEYCNMELIREQMPNHYNLDCPKAPVPCTFSSFGCPEK MQRNDLAMHLQDYTQAHMRMMAQTLRSVSTGLTSQMSCIDTLNSEVDFQPAVMPGVLQAS HSHMQPSPQQPTASSVSCDCSPQIQNLKETVQQLEGRLVRQDHQIRELAAKMETQSNQMV ELKRSARMLEERLGELEAQQCNGIFIWKVENFSAHLLAQAEDQPVVLHSPGFYTGKPGYK LCLRLHLQTPSAQRCSNYISLFVHTMQGEYDSYLPWPFQGTIRLSILDQSEGPIKQNHEE VMESKPELLAFQRPALQRNPKGFGYVTFLHLKALSQRTYVKDDVLLVRCEVVTRMDQNWA RKDDFQPRSAEGGL NT seq 1665 nt NT seq  +upstreamnt  +downstreamnt atggtggactgtgacagcaatcgtgatcccatgttccagagctcatgctgctctgtgagc aacagcatgagggataattgcagcaatcatggacagtactcccatactgtgtttgaagag atgcaaggttacgatgtagagtttgatccaccattggaaaataaatatgagtgtccaatc tgtttaatggcattaagggaggctgtccaaacgccttgtggtcacaggttctgccgcgtc tgcattgtgaaatctattagggatgctggacacaaatgtccagtggacaatgagatgttg ttggaagcccaacttttcccagataattttgcaaaacgagaaattctttctctgacagtc aaatgtcctaacaagggttgttaccagaaaatggaactgcgacatttggaggatcaccag gagctgtgtgaatacgcctttgtcgactgtccgcaatgtgagtctgtgctgtggcgaaag gagctgcagcagcatgtggattcagactgtcccaagagacctgtagcttgcgagaattgt gccatattgatgccctatctggagaaaaaggatcatgatcaaagctgtccattggccaat atcacctgtgaatactgtaacatggagctcatcagagaacagatgcctaaccattataac ctggattgcccgaaagcccccgttccctgcactttcagtagttttggttgcccagaaaag atgcagaggaacgatctggcgatgcatctgcaggattacacgcaggcccacatgcggatg atggctcagacgctgcgcagcgtaagcacaggactgacttctcagatgtcttgcattgac acgctgaactctgaggtggatttccagccagcagtgatgccaggtgtgcttcaggcctcc cactcccacatgcagccatctccacagcagcccacggcatcctctgtgtcctgtgactgc tcgccccagattcaaaacctgaaggaaaccgtccagcagctggagggacgcctggtgcga caggaccaccagatccgcgagctagctgccaagatggagacgcagagtaaccagatggtg gagctgaaacgcagtgcccgcatgctggaggagcgcctgggtgagctggaggcccagcag tgcaatgggattttcatctggaaggtggaaaacttcagcgcccacctgctggcacaggcg gaggaccaacccgtggtgctccacagccctggcttctacacgggcaagccgggatacaag ctgtgcctccgcctgcatctgcagacacccagtgcccagcgctgctccaattacatttca ctctttgtgcacaccatgcaaggtgagtacgacagctacctgccctggcccttccagggc accatccggctctccatcctcgaccagtcagagggacccatcaagcagaaccacgaggag gtcatggaaagcaagcctgagttgctggcatttcagcggcctgccctgcagcgcaacccc aagggctttggctacgtcaccttcctgcacctcaaagccctcagtcaacgcacgtacgtg aaggatgacgtattgcttgtccgttgcgaggtggtaacccggatggaccagaactgggca aggaaagatgacttccagcctcgctcagcagaaggtggcctgtga

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