Hemitrygon akajei (red stingray): 140738373
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Entry
140738373 CDS
T11019
Symbol
kdm2bb
Name
(RefSeq) lysine (K)-specific demethylase 2Bb isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
haka Hemitrygon akajei (red stingray)
Pathway
haka03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
haka00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
140738373 (kdm2bb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
haka03000
]
140738373 (kdm2bb)
04121 Ubiquitin system [BR:
haka04121
]
140738373 (kdm2bb)
03036 Chromosome and associated proteins [BR:
haka03036
]
140738373 (kdm2bb)
Enzymes [BR:
haka01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
140738373 (kdm2bb)
Transcription factors [BR:
haka03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
140738373 (kdm2bb)
Ubiquitin system [BR:
haka04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
140738373 (kdm2bb)
Chromosome and associated proteins [BR:
haka03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
140738373 (kdm2bb)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
140738373 (kdm2bb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
F-box
JHD
JmjC
Cupin_8
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
140738373
NCBI-ProteinID:
XP_072921695
LinkDB
All DBs
Position
14:20623688..20855462
Genome browser
AA seq
1266 aa
AA seq
DB search
MDVEKETGRRLRTFCRRRYDNEDLSDDDIASMRTFDVEEKLSSDSYNSSYVQFMKGKDFT
LEYVQRETIKVPIIFRDKDGLGIKTPDTDFSIRDVKLFVGSRRIVDVMDVNTQKGIEMSM
SQWVKYYETPEAEREKLYNVISLEFSHTKLENLVKRPDVVDLVDWVDNMWPRHLKEKQLD
STNAIAEMKYPKVQKYCLMSVKGCYTDFHIDFGGTSVWYHVLRGGKVFWLVPPTSHNLEI
YEEWVLSGKQGDIFLGDRVDGCQRIELKQGYTFLIPSGWIHAVYTPVDTLVFGGNFLHSF
NIPMQLYIYGIEDRTRVNAKFRYPFYYEMCWYVLERYVFCLTKRSHLTKQYQRESMLIDT
EKKPNTESPSSDSRLDMDEESSDMHVKEEKDETKDKMSTQNTKGFDDDLPSPGSTHSEGN
DSTGKTQKPMRHLKRTLSNDSNDSTKSPMLTDCPKTPSGSPDPSQPVSEGSNKWIHLTEF
ELKGLKALVEKLESLPENKKCVPEGIEDPYALLEDMKTVLEEHADDDQKLAITGVPIVTW
PKKTVKHRTVGRPKGKLGTSAAVKLAANRATAGARRRRTRCRKCEACLRTECGKCHFCKD
MKKFGGPGRMKQSCIMRQCIAPVLPHTAVCLICGEAGKEDTVEEEEAKFNFMLMECSICN
EIVHPGCLKLQDGDGVVNEELPNCWECPKCNHEGKTGKVYKQKRGPGFKYASNLPGSLLK
EQRQNKEHKDNMETVKKKGEREENSKRKSEEHSKKQSDDSVPRRKSEDGLVIRKRRIADR
SSDSVVRKKFKIGREEKLLRRKKRSLHPTEDHATPVKLLRNIKQEPEDDPPETPQKTKES
DQSRSSSPRAGPSTESAESKEKKSERFKEKRKKRLHNKELSKELSKELNQEIHKTESSLA
NENHQPITSEGDSEKVEKPKRLLVSSERLHKLNGTPRFRHQLTTSLRRAPRVITRPPPSV
SPTKSIQMERHVVRPPPVSPPPDSLPLDDGEDHVMQREVWMAVFGYLSRRDLCVCMRVCK
TWNRWCCDKRLWTKIDLGRCKSITPLMLSGIIRRQPVTLDLSWTNISKKQLTWLINRLPG
LKDLIVSGCSWAAISALCSSSCPLLRTVDLRWVEGLKDAQMRDMLSPPTDNRPGQIDNRS
KLRNVTDLHLAGLDITDATLRLIIRHMPMLSRLDLSYCNHLTDQSINLLTAVGTTTRDSL
TEINLSVCNKITDQCLTYFKRCGNICRIDLRYCKQVTKEGCEQFIAEMSVSVQFNLSEEK
LLQKLS
NT seq
3801 nt
NT seq
+upstream
nt +downstream
nt
atggatgtagagaaagagactggacgaagattgcgcacattttgtagaaggcggtatgac
aatgaggacctctcagacgatgacatagccagcatgaggacttttgatgtggaggaaaag
cttagtagtgactcatacaattcaagttacgtgcagtttatgaaaggaaaagattttacc
cttgaatatgtgcagagagagactatcaaggtccccattatcttcagggacaaagatggt
ctaggaatcaaaacaccagataccgatttcagtatcagggatgtaaaactcttcgttggg
agtcgtcgtattgttgatgttatggatgtcaatacacagaaagggattgaaatgagtatg
tcgcaatgggtcaagtactacgagacgccagaggctgaaagggaaaagctctacaatgtc
ataagcttggaattcagtcacacaaaacttgagaacctggtcaagcggcctgatgtggtg
gacttggtggactgggtcgacaatatgtggccacgacacttgaaagaaaagcaacttgac
tccacaaatgcaattgcagagatgaaatatcccaaagttcagaagtactgcttaatgagc
gtcaaaggttgttacaccgattttcacattgactttggcggcacttcagtttggtatcat
gttcttcgaggagggaaggtattctggttagttccacccacatcgcacaatctggagatt
tatgaagaatgggttctgtcaggaaaacaaggtgatattttccttggagacagagtggat
ggatgccagcgaattgagttaaaacaaggatatacctttctgatcccttcaggatggatc
catgcagtgtacactccagtagacacgttggtttttggcggaaatttcctgcacagcttt
aatattcccatgcagctttatatttatgggattgaggatcgaactcgggttaatgccaag
ttccgttatcctttctactatgaaatgtgctggtatgtcttggaaagatatgtgttctgt
ttgacaaaacggtctcatctcaccaaacagtaccagagggaatcaatgttaattgataca
gagaagaaaccaaatacagagagtccctcatcagattcccgactcgacatggatgaggaa
tcttctgatatgcatgtcaaggaggagaaagatgagacaaaagataaaatgagcactcaa
aacacgaaaggatttgatgatgatttgccttctcccggcagtacacattcagaaggaaat
gatagcactggaaagacacagaaaccgatgaggcatttaaagcggactttatctaatgac
tcaaatgacagtactaagtcaccaatgctgacggactgcccaaagaccccaagcggatct
cctgacccctctcagccagtatctgaggggtctaacaaatggattcacctgactgagttt
gaactgaaagggttaaaggcacttgtggaaaaactggaatccttaccagagaacaagaaa
tgcgtccctgaaggaatagaagatccttacgcccttctggaagatatgaagactgttctg
gaggaacatgctgatgatgatcagaaattggctattactggagtcccaattgtaacatgg
ccaaaaaagacagtgaagcataggacagtaggccggccaaaaggaaagcttggaacctct
gcagcagtgaagcttgctgctaacagagctacagctggagcacgtaggaggagaacaaga
tgtcggaaatgcgaggcatgtttaagaaccgaatgtggcaaatgccatttctgcaaggat
atgaagaaatttggaggaccagggagaatgaaacaatcctgtatcatgagacagtgcatt
gcaccagtcctgccacacacagcagtctgtcttatctgtggagaagcaggaaaagaggac
actgtggaagaagaggaggcaaagttcaatttcatgctgatggaatgctccatttgtaat
gaaattgtgcatcctggctgcttaaagctacaggatggagatggagttgtcaatgaagaa
ttgccaaactgctgggaatgtccaaagtgcaaccatgagggtaaaacagggaaagtctat
aagcagaaaagagggccaggatttaagtatgcctccaacctcccaggttcactgctgaaa
gagcaaaggcagaacaaagagcataaggacaacatggaaacagtcaagaaaaagggtgag
cgagaggaaaattccaagcggaaatccgaggaacattccaagaaacaatcagatgactct
gttcccaggaggaaatccgaggatgggcttgtgatacggaagcgacgaattgctgataga
tcatcagactcagttgtcaggaaaaagtttaagattggaagggaagaaaagctgttaagg
agaaagaaacgatccttgcatccaaccgaagaccatgcaacacctgtcaaattactacgg
aatatcaaacaagagccagaggatgatccacccgagactcctcagaaaacaaaggaaagt
gaccaatctcggtcgagctctccgagagctggtcctagcactgaaagtgcagagtccaag
gagaagaaaagcgagaggtttaaagaaaagcgcaaaaagcgattgcacaataaagaactc
agtaaagagttgagcaaagaactcaatcaggaaattcataaaactgagagtagcctagca
aatgagaatcaccaacctattacatctgaaggagacagtgaaaaagtggaaaagcctaaa
cgattgctggtaagcagcgagcggctacacaagttaaatggaactcctaggtttagacac
cagcttacaacgagtttgaggcgggctcccagggttattacccgacctccaccttcggtg
tccccaacaaaatccattcaaatggagcggcatgtggtgcggcctccacctgtcagccca
cccccagactcattgccccttgatgatggcgaagaccacgtgatgcaaagggaggtgtgg
atggctgtgttcggctacctcagtcgcagagatttatgtgtttgcatgagagtctgtaaa
acctggaatagatggtgttgtgacaagaggttatggaccaagatcgacttgggccgatgc
aagtcaatcacgcctctgatgttgagcggaatcattaggaggcaacctgtaacgcttgac
ctgagctggacaaatatctcaaaaaagcagttaacttggctaatcaacaggctgccaggt
cttaaggacttgattgtttctggttgctcctgggcagcaatatcagcactttgcagctct
agttgccccttgctcagaaccgtagatctcagatgggtggaaggattaaaagatgctcaa
atgagagatatgctttcacctccaactgacaacagaccaggccagattgacaatcgtagc
aaattacgtaacgtgacagatcttcacttggctggcctggatattacagatgcaacactc
cgccttattattaggcacatgccgatgctctccagactagatcttagttactgtaaccat
ctgacagaccagtcaattaacctattaacagcagttggcacaacaacaagagattcctta
acagaaatcaatctatcggtttgcaataaaatcactgaccagtgcctaacctatttcaaa
cgctgtggcaacatctgccgaatagatcttcgttattgtaagcaggtaacgaaggaaggc
tgcgaacagttcatagcagagatgtctgttagcgttcagttcaatttgtcagaggagaaa
ctgttacaaaaacttagttaa
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