Haloterrigena alkaliphila: J0X25_06105
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Entry
J0X25_06105 CDS
T07793
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hakz
Haloterrigena alkaliphila
Pathway
hakz03030
DNA replication
hakz03410
Base excision repair
hakz03420
Nucleotide excision repair
hakz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hakz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
J0X25_06105 (ligA)
03410 Base excision repair
J0X25_06105 (ligA)
03420 Nucleotide excision repair
J0X25_06105 (ligA)
03430 Mismatch repair
J0X25_06105 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hakz03032
]
J0X25_06105 (ligA)
03400 DNA repair and recombination proteins [BR:
hakz03400
]
J0X25_06105 (ligA)
Enzymes [BR:
hakz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
J0X25_06105 (ligA)
DNA replication proteins [BR:
hakz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
J0X25_06105 (ligA)
DNA repair and recombination proteins [BR:
hakz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
J0X25_06105 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
J0X25_06105 (ligA)
MMR (mismatch excision repair)
DNA ligase
J0X25_06105 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
J0X25_06105 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_5
HHH_2
BRCT
HHH
DNA_ligase_ZBD
5_3_exonuc
RNA_ligase
RUBY_RBDX
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
QSX00529
UniProt:
A0A8A2VR17
LinkDB
All DBs
Position
complement(1257623..1259701)
Genome browser
AA seq
692 aa
AA seq
DB search
MSVADEDEENPYLREPSTDFRSVEELSEDEAREQVELLREAIREHDRRYYVESDPVIADR
TYDALFARLRDLEDAFDLSHPDSPTRSVGGEPLEAFETVEHVAPMLSIDQSGEEEDVREF
ADRVRREVGAVQYVCEPKFDGVSMEFVYENGSLERAATRGDGREGDDVTRNARTIGSVPQ
KLHGDYPDFLAVRGEVYMPKDAFQAHNRERIERGEDPFANPRNATAGTIRQLDPSVVADR
PLEVFFFDVLEASDLEDSHSAELERFPEWGLRVTDHVEFAADIDEAIDYRDRMLEARDDL
NYEIDGTVIKVDDREAREELGRTARHDRYAFAYKFPARAEVTPIVDVAVQVGRTGRLTPV
ALLEPVDVGGVTVSRASLHNPDEIEEKNVNIGDTVRVQRAGDVIPYVEEVVEKSSEGHYE
LPDHCPVCDSPVERDGPIAFCTGGLACDAQLRRSIEYYAGDDGLDLEGLGEKSVRQLVDA
GLLESVADLYELDREDLTDLEGWGETSAENVISEIEASREPPLAAFLSALGIPHVGPTTA
RELAREFGTFEAFREAAENDLERLEDVPDVGETVAEQLHEFFASEANAAAVDDLLEHVSP
QESDLESGGDELEGQTFVFTGSLEGLTRSEAQETVEAHGANATGSVSGNTDYLVVGDNPG
QTKRDDAAANDVPIVDEDEFRELLAERGIDLE
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtcgccgacgaggacgaagagaacccctatctccgggagccgtcgaccgacttc
cggtcggtcgaggagctttcggaagacgaggcccgcgagcaggtggaactgctccgcgag
gcgatccgcgagcacgaccgccggtactacgtcgagagcgatcccgtcatcgccgaccga
acgtacgacgcactcttcgctcgcctgcgagacctcgaggacgccttcgacctctcccat
cccgacagcccgacccggagcgtcggcggtgaaccgctcgaggcgttcgagacggtcgag
cacgtcgcgccgatgctgtcgatcgaccagagcggcgaggaggaagacgttcgcgagttc
gctgaccgcgttcgccgtgaggtgggtgctgtccagtacgtctgcgaaccgaagttcgac
ggcgtctcgatggagttcgtctacgagaacggctcgctcgagcgggcggcgacccgcggc
gacggccgcgagggagacgacgtgacgcgtaacgcacgcaccatcggctccgtcccccag
aaactccacggcgactaccccgacttcctcgccgtccgcggtgaggtctacatgcccaag
gacgcgtttcaggcccacaaccgcgagcgcatcgagcgcggagaggaccccttcgccaac
ccccggaacgcgaccgcggggacgatccggcagctcgacccctcggtcgtcgccgaccgc
ccgctcgaggtgttcttcttcgacgtgctcgaggccagcgacctcgaggactcccacagc
gccgaactcgagcggttccccgaatgggggctgcgggtcaccgaccacgtcgagttcgcg
gccgacatcgacgaggctatcgactaccgcgaccggatgctcgaggcccgcgacgacctg
aactacgaaatcgacggcaccgtgatcaaggtcgatgaccgcgaggcccgcgaggaactc
ggtcgaaccgcgcgccacgaccgctacgccttcgcctacaagttccccgcccgcgcggag
gtgacgccgatcgttgacgtcgcggtgcaggtgggccgaactggtcgattgacgccggtg
gccctgctcgagccggtcgacgtcggcggcgtgacggtctcccgggcgagcttgcacaac
cccgacgagatcgaggagaagaacgtgaatatcggcgacaccgtccgcgtccagcgggcc
ggcgacgtcatcccctacgtcgaggaggtcgtcgaaaagtcgagcgagggccactacgaa
ctcccggatcactgccccgtctgcgacagccccgtcgagcgcgacggcccgatcgccttc
tgtaccggcgggctagcctgcgacgcacagctccggcgctcgatcgagtactacgccggc
gacgacggcctcgacctcgagggactcggcgagaagagcgtccgccaactcgtcgacgcc
ggcttgctcgagtccgtcgcggacctctacgaactcgatcgcgaggatctcacggacctc
gagggctggggcgaaacgagcgccgagaacgtcatcagcgaaatcgaagccagccgcgag
cccccgctggcggcatttctctccgcgctgggcatcccccacgtcggcccgacgacggcc
cgcgaactcgcccgcgagttcggcacgttcgaggcgttccgtgaagctgccgagaacgat
cttgagcgactcgaggacgtaccggacgtcggcgagaccgtcgccgaacagctccacgag
tttttcgccagcgaggccaacgccgcggccgtcgacgacctgctcgagcacgtctcaccg
caggaatccgatctcgagagcggcggcgacgaactcgaggggcagacgttcgttttcacg
ggatcgctcgagggcctcacacggtccgaagcccaggagaccgtcgaagcccacggcgcc
aacgcgacgggcagcgtttcggggaacacggactacctcgtcgtcggcgacaaccccggc
cagacgaaacgggacgatgcggcggcgaacgacgtgccgatcgtcgacgaggacgagttt
cgcgagttgcttgccgagcgcgggatcgacctcgagtga
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