Halorhabdus sp. CBA1104: Hrd1104_04645
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Entry
Hrd1104_04645 CDS
T06289
Symbol
nth
Name
(GenBank) endonuclease III
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
hala
Halorhabdus sp. CBA1104
Pathway
hala03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
hala00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Hrd1104_04645 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hala03400
]
Hrd1104_04645 (nth)
Enzymes [BR:
hala01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Hrd1104_04645 (nth)
DNA repair and recombination proteins [BR:
hala03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Hrd1104_04645 (nth)
Prokaryotic type
Hrd1104_04645 (nth)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HhH-GPD
HHH
EndIII_4Fe-2S
HHH_5
RecR_HhH
5_3_exonuc
Sec10_HB
Motif
Other DBs
NCBI-ProteinID:
QGN06651
LinkDB
All DBs
Position
complement(892222..892911)
Genome browser
AA seq
229 aa
AA seq
DB search
MGTPLADREEQAAVVIERLHEEYPDATISLTFSNRLELLVAVVLSAQCTDERVNDVTEDL
FEKYETPADYAEAEEAQLADDIYGITFHNNKAGYLKGIGQRLLEEHDGEVPDTMDALTAL
PGVGRKTANVVLQHGHDVVEGVVVDTHVQRLSRRLGLTDNERPEAIEPDLQELVPRGDWQ
EITHLFISHGREVCTARSPDCDACLLEDHCPSSQLDRDVDMASGEPWDA
NT seq
690 nt
NT seq
+upstream
nt +downstream
nt
atgggaacgccactggcagaccgcgaggagcaggcggcggtggtcatcgaacggttgcac
gaggaataccccgacgcgacgatctcgctgaccttctcgaaccgtctcgagttgctcgtc
gccgttgtcctctcggctcagtgtaccgacgagcgcgtcaacgacgtcaccgaggacctc
ttcgagaaatacgagacgccagcggactacgccgaggccgaggaggcccaactggccgac
gacatctacggtatcacgtttcacaacaacaaggcgggatacctgaaaggaatcggccaa
cgcctcctcgaagagcacgacggcgaggtcccggacacgatggacgcgctgacggctctg
cctggtgtggggcggaaaacagccaacgtcgtcctccagcacggccacgatgtcgtcgag
ggcgtcgtcgtggatacgcacgttcagcgcctctcccggcgacttggattgaccgacaac
gaacgcccggaagccatcgaaccagacctgcaggaactcgtcccgcgaggggactggcaa
gagattacacacctgtttatcagccacggccgcgaggtgtgtacggcacggtcgcccgat
tgtgacgcgtgtctgctcgaagatcactgtccctcatcacaactggatcgcgacgtcgat
atggccagtggcgagccgtgggatgcctga
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