Halorhabdus sp. CBA1104: Hrd1104_08390
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Entry
Hrd1104_08390 CDS
T06289
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hala
Halorhabdus sp. CBA1104
Pathway
hala03030
DNA replication
hala03410
Base excision repair
hala03420
Nucleotide excision repair
hala03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hala00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Hrd1104_08390 (ligA)
03410 Base excision repair
Hrd1104_08390 (ligA)
03420 Nucleotide excision repair
Hrd1104_08390 (ligA)
03430 Mismatch repair
Hrd1104_08390 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hala03032
]
Hrd1104_08390 (ligA)
03400 DNA repair and recombination proteins [BR:
hala03400
]
Hrd1104_08390 (ligA)
Enzymes [BR:
hala01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Hrd1104_08390 (ligA)
DNA replication proteins [BR:
hala03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Hrd1104_08390 (ligA)
DNA repair and recombination proteins [BR:
hala03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Hrd1104_08390 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Hrd1104_08390 (ligA)
MMR (mismatch excision repair)
DNA ligase
Hrd1104_08390 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Hrd1104_08390 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
BRCT_2
IPPT
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
QGN07321
UniProt:
A0A650A4S8
LinkDB
All DBs
Position
complement(1648047..1650128)
Genome browser
AA seq
693 aa
AA seq
DB search
MTANAPEANPYLADPPTDFSPVAALDADGARKQAQQLREAIRYHDHRYYVQNDPVIGDRI
YDALFARLQDLEEHFDLDREDSPTRRVGGQPLDELDSLEHVAPMQSIDQGGEVADVREFD
DRVARRLDDAGFDPHVRAYFCEPKFDGLSVEIVYEDGVYQRAATRGDGEVGEDVTENVRT
IPSVPGRLRGDYPDFLAVRGEVLMPTEAFQAHNRERIERGDDPFANPRNAAAGTLRQLDP
SITAERPLSIFFFGVLDASVDFGTNSEVYERLPEWGLRVTDLAERADSIEGAIDYRDRLL
AERDALPFEIDGVVLKLNDREACGALGSTARAPRWAFAYKFPARTERTTIRDVVVQVGRT
GRLTPVALMDPVEVGGVMVSRASLHNPAEIERLGVAVGDEVRVQRAGDVIPEVAEVVESN
SDGTFDFPATCPVCDSPVERDGPLAFCTGGLACPAQLERAIVHYASRDGLDIEGLGEERI
QQLLDAGLVEELADLYELGQLDLTSLEGWGMQSVANLQEELEASREPPLDDFLAALNIPS
VGSATATALAREFGTFDAMMDADREQLQAVEDIGPRVAEDVRDFFESERNHDAIERLLEH
VEPQPYEVEGGDALDGLTFVFTGSLSGFTRSEAQALVEAHGGSATSSVSGNTDYLVAGEN
PGQRKRTDAQENDVPILDESAFESLLADRGVTA
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgacagccaacgccccggaagccaatccgtaccttgcggatccaccgacggacttttcg
cccgtcgcggcactcgacgctgacggtgcccgaaaacaggcccagcagttgcgcgaggcg
atccgctatcacgaccaccgctactacgtacagaacgatcccgtgatcggtgatcgaatc
tacgacgccctctttgctcgcctgcaggacctcgaagagcacttcgacctcgatcgcgag
gacagtcccacccggcgcgtcggtgggcagccactggacgaactcgactccctcgaacac
gtcgcgcccatgcagtcgatcgaccagggcggcgaagtcgcggacgtccgggaattcgac
gaccgcgttgcccgccgactcgacgacgctggcttcgacccccacgtgcgggcctacttc
tgtgagcccaaattcgacggcctctcggtggagatcgtctacgaggacggcgtctaccag
cgggcggccacccgcggggacggcgaggtcggcgaggacgtcaccgagaacgtccggacg
atcccgagcgtgccgggacgactgcggggtgactaccccgactttctggcggtacgtggt
gaagtcctcatgccgaccgaggccttccaggcgcacaaccgcgagcgaatcgaacgtggt
gacgatccgttcgccaacccgcgcaacgccgccgcgggcacgctccggcaactcgatccg
tcgatcacggccgaacgacccctctcgattttcttcttcggcgtgctggacgcgagcgtg
gacttcgggaccaacagtgaggtctacgaacgcctcccagaatgggggctccgcgtcacc
gatctcgccgaacgcgccgactcgatcgagggggcgatcgattatcgcgaccgattgctc
gccgagcgcgatgccctcccattcgagatcgatggcgtcgtgctcaaattgaacgaccgc
gaagcctgcggcgcactcggctcgaccgcccgtgcgccccgctgggcctttgcctacaag
ttcccggcccggaccgagcggacgacgatccgagatgtcgtcgttcaggtcggtcggact
ggccggttgacgcccgtcgcgctgatggatcctgtcgaggtcggcggcgtgatggtctcg
cgggcctcgctgcacaaccccgccgagatcgaacgcctgggcgtcgccgtcggcgacgaa
gtacgcgtccagcgggccggcgacgtgatcccggaagtcgcggaggtcgtcgaatcgaac
agcgacgggacattcgacttcccggctacctgtcctgtctgtgacagcccggtcgaacgc
gacggcccgctggccttttgtaccggcgggctggcctgcccagcgcaattggaacgggca
atcgttcactacgccagtcgcgacggcctggacatcgaggggcttggcgaagaacgcatc
cagcaactcctggatgccggcctggtcgaagagttggccgacctctacgaactcgggcaa
ctcgatttgacctcgctggaggggtgggggatgcagtcggtcgccaacctccaggaggaa
ctcgaggcgagtcgggagccacccctcgatgacttcctcgcggcgctgaacattccctcg
gtcggtagcgcgacggcgactgccctcgctcgggagttcggcacgttcgacgccatgatg
gacgccgatcgcgagcagttacaggccgtcgaagacatcggaccgcgggtcgccgaagac
gtccgtgactttttcgagagcgagcgcaaccacgacgccatcgagcgcctgctcgagcac
gtcgagccacagccctacgaggtcgagggtggcgacgcactcgacgggttgacgttcgtg
ttcacgggatcgctgtcgggcttcactcgcagtgaagcccaagcactcgtcgaggcccac
ggcgggtcagcgacgagtagtgtttcggggaacaccgattatctcgtggccggcgagaat
cccggtcagcgcaagcgtacggatgcccaagaaaacgacgtcccgattctcgacgagtcg
gcgttcgagtcgctactggccgatcgtggcgtgaccgcttaa
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