Haloarcula sp. JP-L23: G9465_01355
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Entry
G9465_01355 CDS
T06489
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
halj
Haloarcula sp. JP-L23
Pathway
halj03030
DNA replication
halj03410
Base excision repair
halj03420
Nucleotide excision repair
halj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
halj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
G9465_01355 (ligA)
03410 Base excision repair
G9465_01355 (ligA)
03420 Nucleotide excision repair
G9465_01355 (ligA)
03430 Mismatch repair
G9465_01355 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
halj03032
]
G9465_01355 (ligA)
03400 DNA repair and recombination proteins [BR:
halj03400
]
G9465_01355 (ligA)
Enzymes [BR:
halj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
G9465_01355 (ligA)
DNA replication proteins [BR:
halj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
G9465_01355 (ligA)
DNA repair and recombination proteins [BR:
halj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
G9465_01355 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
G9465_01355 (ligA)
MMR (mismatch excision repair)
DNA ligase
G9465_01355 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
G9465_01355 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
HHH
DNA_ligase_ZBD
5_3_exonuc
Nlig-Ia
DNA_circ_N
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QIO21081
LinkDB
All DBs
Position
complement(274633..276735)
Genome browser
AA seq
700 aa
AA seq
DB search
MAAVDDPETDNPYVSDPPTEFAPVEELSEAEASEQAAQLREAVRYHDHRYYVENDPVIGD
RTYDALFSRLQTLESVFDLDTEGSPTQRVGGEPLDELGEVEHVAPMQSIDQGGEAEDARA
FDERVRRRLADADYDGDVEYFCEPKFDGLSIEVVYEDGEYQRAATRGDGEVGEDVTENVR
TVASVPQRLRGDYPDFLAVRGEVYMPREAFTQYNRERVEEGRDPFANPRNAAAGTLRQLD
PSVTAKRPLSVFFFGVLDASVEFESHSALHERFPEWGLRVCDRTAVVDDIEAAIDYRDEQ
LDARDDLDYEIDGVVLKVDDIEACDLLGTTSRAPRWAFAYKFPARKEETTVRDVVVQVGR
TGRLTPVALMDPVEVGGVTVTRASLHNPSLIEELGVDVGDRVRIKRAGDVIPDVVEVVEK
SGEGHFEFPETCPVCDSAVERDGPMAFCTGGLSCPAQRERSVEHYASRDALDIEGLGEKA
VEHLLDAGLVDDAADLYDLSVDELAELEGWGETSAQNLVDELDDARNPPLADFVVALGIP
HVGDVTARNLAQEFGTFEAILEAGEDGDREAFEAVPDVGPEVAESIVEFFESEGNRDVLD
RLLDHVDPQAAEATGGDALEGLTFVFTGSLSGLTRGDAQDVVERNGGSATSSVSGNTDFL
VVGENAGQRKREDAEANDVELLDGREGFEAKLGEYGVDVE
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atggcagccgtcgacgaccccgagacagacaatccgtacgtctccgacccaccgacggag
ttcgctcccgtcgaggaactgagcgaggccgaggccagcgagcaggccgcccagttgcgc
gaggccgtccggtatcacgaccaccgctactacgtcgagaacgacccggtcatcggggat
cggacctacgacgctttgttctcgcgcctgcagacactcgaatcggtgttcgacctcgac
accgagggaagccccacgcaacgcgtcggcggcgaaccgcttgacgaactcggcgaggtc
gaacacgtcgcgcccatgcagtctatcgaccaaggcggcgaggccgaggacgcccgggcg
ttcgacgagcgggtgcggagacggctggccgacgcggactacgacggcgacgtagagtac
ttctgtgagccgaagttcgacggcctctcgatcgaagtcgtctacgaggacggcgagtac
cagcgggcggccacccgcggcgacggcgaggtgggcgaggacgtcaccgagaacgtccgc
actgtcgccagcgtcccccagcgcctgcgcggggactaccccgacttcctcgccgtccgc
ggcgaggtgtacatgccacgcgaggccttcacgcagtacaaccgtgaacgcgtcgaggag
ggacgagaccccttcgcaaatccccggaacgccgccgccgggacgctccgccaactggac
cccagtgtcactgcaaagcgcccgctttcggtgtttttcttcggcgtcctcgatgcctcg
gtcgagttcgagagccacagcgcactccacgagcggttcccagagtggggcctgcgggtc
tgtgaccgcaccgccgtcgtcgacgatatcgaggctgcaatcgactaccgcgacgagcaa
ctcgacgcccgcgacgacctcgattacgagatagacggcgtcgtcctgaaggtcgacgac
atcgaggcctgtgacctgctggggacgaccagccgcgcgccacgctgggcgttcgcctac
aagttccccgcccggaaggaggagacgacggtacgggacgtcgtcgtgcaggtgggtcgg
acgggacggttgacccccgtcgcactgatggaccccgtcgaggtcggcggcgtcaccgtc
acccgcgcgtcgctgcacaacccgtcgctcatcgaggaactcggcgtcgacgtcggtgac
cgcgtgcgcatcaagcgcgccggcgacgtgatcccggacgtggtcgaggtggtcgagaag
tcgggcgagggccacttcgagttcccggagacgtgcccggtgtgtgacagcgccgtcgag
cgcgacgggccgatggcgttctgcaccggcggcctctcctgtcccgcccagcgcgaacgc
tccgtcgagcactacgccagccgggacgccctcgatatcgaagggctcggagagaaggcc
gtcgaacacctcctcgacgccggtctcgtcgacgacgccgccgacctctatgacctctcg
gtcgacgaactggccgaactggagggctggggcgagaccagcgcgcagaacctcgtcgac
gaactcgacgacgcccggaacccgccgctcgccgacttcgtcgtcgcgctcggcatcccg
cacgtcggggacgtgaccgcacggaacctcgcacaggagttcgggacgttcgaggcgatt
ctcgaagcgggtgaggacggcgaccgcgaggcgttcgaggccgtccccgacgtcggcccg
gaagtcgccgagagcatcgtcgagttcttcgagagcgagggcaaccgcgacgtgctggac
agactgctggaccacgtcgacccgcaggccgccgaggcgaccggcggcgacgccctggag
ggcctgaccttcgtgttcacggggtcgctttccggcctcacgcgcggggacgcacaggac
gtcgtcgagcgcaacggtggctcggcgaccagcagcgtctcgggcaacacggacttcctc
gtcgtcggcgagaacgccggccagcgaaagcgcgaggacgccgaggcaaacgacgtcgaa
ctgctggacggccgcgaggggttcgaggcgaaactcggggagtacggcgtcgacgtggag
tga
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