Halomicrobium sp. LC1Hm: LC1Hm_1337
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Entry
LC1Hm_1337 CDS
T06261
Symbol
nth
Name
(GenBank) Endonuclease III
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
hall
Halomicrobium sp. LC1Hm
Pathway
hall03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
hall00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LC1Hm_1337 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hall03400
]
LC1Hm_1337 (nth)
Enzymes [BR:
hall01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
LC1Hm_1337 (nth)
DNA repair and recombination proteins [BR:
hall03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
LC1Hm_1337 (nth)
Prokaryotic type
LC1Hm_1337 (nth)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH_5
HHH
HHH_2
Ogg-HhH
Motif
Other DBs
NCBI-ProteinID:
QGA82391
UniProt:
A0A5Q0ULU5
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All DBs
Position
1235465..1236175
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AA seq
236 aa
AA seq
DB search
MQSPEEWTAADVRELHDDLVSLYEPVAQTEAHGADADAEPGEGVRQLVTTILSQNVADEN
TRRASESLFETYDDFSAIEAADHDELAETIRVAGLPDQKAARIQRALAAIREETGGAYSL
AFLDALPTAEAKAWLTDIKGVGPKTASVVLNFHFGKPTMAVDTHVERVSKRFGLVPEDAS
NERAHDVLDAVVPDELTYPLHVLLIRHGRTHCSARNPDCDNRVCERYCDCDGCGGD
NT seq
711 nt
NT seq
+upstream
nt +downstream
nt
atgcagagtcccgaagagtggacggcggcggacgtacgcgagttgcacgacgacctcgtc
tcgctgtacgaaccggtcgcacagaccgaggcacacggtgccgacgccgacgcggagccg
ggcgagggcgttcgacagctggtgacgacgatcctctcgcaaaacgtcgccgacgagaac
acgcgccgggcatcggagtcgctgttcgagacctacgacgacttttcggccatcgaggcg
gccgaccacgacgagctggccgagacgatccgcgtcgccggcctcccggaccagaaggcg
gcccgcatccagcgtgcgctggcggcgatccgcgaggagaccggcggggcctactcgctg
gccttcctcgacgcgctgccgacagcggaggcgaaggcgtggctcacggacatcaaaggg
gtgggtcccaagaccgccagcgtcgtgctgaacttccacttcgggaagccgacgatggcc
gtcgacacgcacgtcgagcgcgtgtccaagcgattcgggctcgtccccgaggacgcgagc
aacgagcgcgcccacgacgtgctcgacgcggtcgtgccggacgaactcacgtatccgctc
cacgtcctgctcatccgccacgggcgcacgcactgctcggcgcggaacccggactgtgac
aaccgggtctgtgagcggtactgcgactgtgacggctgtgggggcgactga
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