Halomonas sp. 1513: BWR19_02730
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Entry
BWR19_02730 CDS
T04761
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
halo
Halomonas sp. 1513
Pathway
halo03030
DNA replication
halo03410
Base excision repair
halo03420
Nucleotide excision repair
halo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
halo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BWR19_02730 (ligA)
03410 Base excision repair
BWR19_02730 (ligA)
03420 Nucleotide excision repair
BWR19_02730 (ligA)
03430 Mismatch repair
BWR19_02730 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
halo03032
]
BWR19_02730 (ligA)
03400 DNA repair and recombination proteins [BR:
halo03400
]
BWR19_02730 (ligA)
Enzymes [BR:
halo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BWR19_02730 (ligA)
DNA replication proteins [BR:
halo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BWR19_02730 (ligA)
DNA repair and recombination proteins [BR:
halo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BWR19_02730 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BWR19_02730 (ligA)
MMR (mismatch excision repair)
DNA ligase
BWR19_02730 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BWR19_02730 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
DZR_2
Nlig-Ia
HHH
RNA_pol_A_CTD
Plectin_PPL
Motif
Other DBs
NCBI-ProteinID:
APX91946
LinkDB
All DBs
Position
595609..597690
Genome browser
AA seq
693 aa
AA seq
DB search
MTQPDPQIRDEIASLRDELDDANHRYYVLDEPRLTDADYDRKLRRLQALEDEYPDQITPD
SPTQRVGAAPADGFPEIQHAVPMLSLDNAFDDDELRAFVKRVGERLERDGEQLTFCCEPK
LDGAAVSLVYEHGALAFGATRGDGRTGEGITSNLRTMRSVPLKLRSDGHPALLEVRGEVI
MSHERFEALNHKAREEGGKVFANPRNAAAGSLRQLDPAITRTRPLEFTAYQVARIEPDLG
DATHSALMARLGTLGFRTSRELTTVTGSQGLIDYCRRLGERRDALGYDIDGVVIKVDDLR
LQRELGFVARAPRWAVAYKFPAQEQTTRLNDVEFQVGRTGAITPVARLEPVTVAGVTVSN
ATLHNADEIARLGVMIGDTVSIRRAGDVIPQVVRVLDEQRPADARDIVFPERCPVCDSAI
ERVEGEVAARCSGGLYCAAQRKEALKHFASRRALDIDGLGEKLIDQLIERDWVKTPADLF
RLDAERLAELPRMGQKSSENLVAALQRAKATTLARFIYALGIREVGEATAGNLASHFGTL
QALMDAEQQDLEAVNDVGPIVAAHVHGFFREPHNREIIDDLLGCGLAWEEQEIGERPQPL
IGETWVLTGTLENLTRDEGKARLQALGAKVAGSVSKKTACVVAGPGAGSKLAKAEELGVT
VIDEAEFLTRLARWEAGGAYQPDENQADEEPAP
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgacccagcccgatccccagatccgcgacgagatcgcgagcctgcgtgacgaactcgac
gacgccaaccatcgctactacgtgctcgatgaaccacgcctcaccgatgccgactacgac
cgcaagctacgccgcctccaggcactcgaggatgaataccccgaccagataacgccggat
tcgcccacccagcgggtcggcgccgcgccggccgacggctttcccgagatccagcatgcg
gtgcccatgctgtcgctggacaacgccttcgacgacgacgagctgcgcgccttcgtcaag
cgcgtcggcgaacgcctcgagcgcgacggcgagcagctgaccttctgctgcgaacccaag
ctcgacggtgccgcggtgtcgctggtctacgagcacggcgcgctggccttcggcgccacc
cgcggcgacggccgcaccggcgagggcattacctccaacctgcgcaccatgcgctcggtg
ccgctcaagctgcgcagcgatggccacccggcgctgctcgaagtgcgcggcgaggtgatc
atgagccacgagcgcttcgaggcgctcaaccacaaggcccgcgaagagggcggcaaggtc
ttcgccaatccgcgcaatgccgccgccggcagcctgcgccagctcgacccggcgatcacc
cgcacccggccgctggagttcaccgcctaccaggtggcgcggatcgagccggatctgggc
gatgccacccacagcgccctgatggcgcgtctcggcactctaggtttccgcaccagccgc
gaactgaccaccgtcaccggcagccaggggctgatcgactactgccggcgcctcggcgag
cgccgcgacgcgctgggctacgatatcgacggcgtggtgatcaaggtcgacgacctgcgc
ctgcagcgcgagctgggcttcgtggctcgtgcaccgcgctgggcggtggcctacaagttt
cccgcccaggagcagaccacgcgtctcaacgacgtcgagttccaggtcggccgcaccggc
gccatcaccccggtggcacgcctcgagccggtcacggtggccggcgtgacggtctccaac
gcgaccctgcacaacgccgacgagatcgcccggctgggcgtgatgatcggcgataccgtg
agcatccgccgcgccggcgacgtgatccctcaggtggtgcgggtgctcgacgagcagcgc
ccggcggatgcccgcgatatcgtgtttcccgagcgctgcccggtgtgcgactcggccatc
gaacgggtcgagggcgaggtcgcggcgcgctgcagcggcggcctctactgtgccgcccag
cgcaaggaggcgctcaagcacttcgcctcgcggcgcgcgctggatatcgacggcctgggc
gagaagctgatcgaccagctgatcgagcgcgactgggtcaagacgcccgccgacctgttc
cggctcgacgccgagcgtctcgccgagctgccgcggatgggccagaagtcctccgagaac
ctggtggcggcgctgcagcgcgccaaggcgaccacgcttgcccgcttcatctacgcgctg
ggcatccgcgaggtgggcgaggccaccgccggcaacctggccagccacttcggcaccctg
caggcattgatggacgccgagcagcaggatctcgaagcggtcaacgacgtcggcccgatc
gttgccgcccatgtccacggcttcttccgcgagccgcacaaccgcgagatcatcgacgac
ctgctcggctgcggcctcgcctgggaggagcaggagatcggcgagcggccccagccgctg
atcggcgagacctgggtgctcaccggcaccctcgagaacctgactcgcgacgagggcaag
gcgcggcttcaggcactgggcgccaaggtcgccggcagcgtctccaagaagaccgcctgc
gtggtggcggggccaggcgccggcagcaagctggccaaggccgaagagctgggagtgaca
gtgatcgacgaggccgagttcctgacccggctggcgcgctgggaggccggcggcgcttat
caaccagacgaaaaccaggccgacgaggagccagcaccatga
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