Natronosalvus halobius: NGM15_13035
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Entry
NGM15_13035 CDS
T08721
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
halv
Natronosalvus halobius
Pathway
halv03030
DNA replication
halv03410
Base excision repair
halv03420
Nucleotide excision repair
halv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
halv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NGM15_13035 (ligA)
03410 Base excision repair
NGM15_13035 (ligA)
03420 Nucleotide excision repair
NGM15_13035 (ligA)
03430 Mismatch repair
NGM15_13035 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
halv03032
]
NGM15_13035 (ligA)
03400 DNA repair and recombination proteins [BR:
halv03400
]
NGM15_13035 (ligA)
Enzymes [BR:
halv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NGM15_13035 (ligA)
DNA replication proteins [BR:
halv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NGM15_13035 (ligA)
DNA repair and recombination proteins [BR:
halv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NGM15_13035 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NGM15_13035 (ligA)
MMR (mismatch excision repair)
DNA ligase
NGM15_13035 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NGM15_13035 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
HHH
DNA_ligase_ZBD
RNA_ligase
RUBY_RBDX
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
USZ71006
LinkDB
All DBs
Position
complement(2669712..2671853)
Genome browser
AA seq
713 aa
AA seq
DB search
MSTPTTENPYLRDPPVEFDPVENLDLEAVEVQVERLREAIREHDRRYYVENDPIIADRTY
DRLFSRLQELEDEFDLAHPDSPTRAVGGEPLEAFETVEHVAPMLSIDASGEADDVREFDE
RVRRELRDAGYDDEIAYVCEPKFDGVSMEFVYEDGSLERAVTRGDGREGDDVTRNARTIG
SVPQRLHDDPPESFAVRGEVYMPKNAFQAHNRERIERGEEPFANPRNATAGTIRQLDPAV
VAERPLEVFYFDVLTASDLADSHREELEDFPRYGLRTNDRVELVESADRRSANDRAGDPR
DAIDKAIDYRDRLLEERDDLPYEIDGVVIKVDDREAREELGQTARHDRWAYAYKFPARAE
VTPIVDVAVQVGRTGRVTPVALLEPVDVGGVTVSRASLHNPEEITAKNVNVGDTVRVQRA
GDVIPYVKEVVEKGSEGHYELPDTCPVCGSTVEHDGPLAFCTGGLACDAQRRRSIEYYAS
DDGLDLEGLGEKTVRQLVDAGLLESVADLYELPEKRDALRDLEGWGETSVENLVNEIEAS
REPPLADFLSALGIPHVGPTTARELAREFGSFRAFRRVAEDDPARLEGVDDVGETVAETI
HEFFASEANAAVVDAVLEHVSPQEGDLEDGSDELAGLTFVFTGSLGGMTRGDAQELVEAY
GANATGSVSGNTDYLVAGENPGTTKVSDAEEGGVDVLEEDAFRALLEQRGIEV
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgtccacaccgacgacggagaatccctacctccgggatccgccggtcgagttcgatccg
gtcgaaaacctcgacctcgaggcagtcgaggtgcaggttgaacgcctgcgggaggccatc
cgcgaacacgaccgccggtactacgtcgagaacgatccgattatcgccgaccgtacctac
gaccgactcttctctcgcctgcaggaactcgaggacgaattcgacctcgctcaccccgac
agccccacccgagcggtggggggcgaaccgctcgaggccttcgagacggtcgaacacgtc
gcgccgatgctctccatcgacgccagcggcgaggccgacgacgtccgggagttcgacgag
cgcgtgcgccgggaacttcgcgacgcgggctacgacgacgagatcgcttacgtctgtgaa
cccaaattcgacggcgtctccatggagttcgtctacgaggacgggagcctcgagcgggcg
gtcacccgcggcgacggccgcgaaggggacgacgtgacgcgaaacgcccgaacgatcggc
tcagtcccccagcgattgcacgacgatccgccggaatccttcgccgtccgcggggaagtg
tacatgccaaaaaacgccttccaggcgcacaaccgcgagcgcatcgagcgcggcgaggag
ccgttcgccaatccccggaacgcgaccgcggggacgatccgtcagctcgatcccgccgtc
gtcgccgagcgcccgctcgaggtgttctacttcgacgtactcacagcgagtgacctcgct
gacagtcaccgcgaagaactcgaggactttccccggtacggcctccggaccaacgaccgc
gtcgaactcgtcgaaagcgcggatcgacgttccgcgaacgatcgagcgggggacccccga
gacgcgatcgacaaggccatcgactaccgcgaccgcctgctcgaggaacgcgacgacctc
ccctacgagatcgacggcgtcgtgatcaaggtcgacgaccgcgaggcccgcgaggaactc
gggcagacggcccgccacgaccgctgggcctacgcctacaagttccccgcccgcgcggag
gtgacgcccatcgtcgacgtcgccgtccaggtcgggcgaacggggcgggtcacgccggtc
gcgctcctcgagccggtcgacgtcggcggcgtcacggtctcgcgagcgagcctccacaac
cccgaggagatcaccgcgaagaacgtgaacgtgggcgacaccgtcagggtccagcgtgct
ggcgacgtcatcccctacgtcaaggaggtcgtcgagaaggggagcgagggacactacgaa
ctgcccgatacgtgtcccgtctgcgggagtacggtcgaacacgacggcccgctggcgttc
tgtacgggcggcctggcctgcgacgcccagcgtcggcgatcgatcgagtactacgcgagc
gacgacggcctggacctcgaggggctgggcgagaagacggtccgacagctggtcgacgcg
gggttgctcgagagcgtcgccgacctctacgagttaccggaaaagcgagacgcactccgc
gacctcgaggggtggggtgagacgagcgtcgagaacctggtgaacgaaatcgaggcgagt
cgcgagccgccgttagcggattttctctcggcactcggcatcccccacgtggggccgacg
accgctcgcgagctggcccgcgaattcggctccttccgggctttccgccgggtcgccgag
gacgaccccgcgagactcgagggcgtcgacgacgtgggcgaaaccgtggccgagacgatc
cacgagttcttcgcgagcgaggcgaacgcggcggtcgtcgacgccgtgctcgagcacgtc
tccccacaggaaggcgacctcgaggacggtagcgacgaactcgcgggcctgacgttcgtc
ttcacggggagtcttggaggaatgacccgaggcgacgcccaggagctggtcgaagcctac
ggcgcgaacgcgacggggagcgtctccggcaacaccgactacctcgtcgccggcgagaat
ccggggacgacgaaggtctcagacgccgaggaggggggcgtggacgtactcgaggaggac
gcgtttcgggcgttgctcgagcagcggggtatcgaagtctga
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integrated database retrieval system
