Halomonas alkalicola: B6N23_12635
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Entry
B6N23_12635 CDS
T09267
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
halw
Halomonas alkalicola
Pathway
halw03030
DNA replication
halw03410
Base excision repair
halw03420
Nucleotide excision repair
halw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
halw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
B6N23_12635 (ligA)
03410 Base excision repair
B6N23_12635 (ligA)
03420 Nucleotide excision repair
B6N23_12635 (ligA)
03430 Mismatch repair
B6N23_12635 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
halw03032
]
B6N23_12635 (ligA)
03400 DNA repair and recombination proteins [BR:
halw03400
]
B6N23_12635 (ligA)
Enzymes [BR:
halw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
B6N23_12635 (ligA)
DNA replication proteins [BR:
halw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
B6N23_12635 (ligA)
DNA repair and recombination proteins [BR:
halw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
B6N23_12635 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
B6N23_12635 (ligA)
MMR (mismatch excision repair)
DNA ligase
B6N23_12635 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
B6N23_12635 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
DZR_2
5_3_exonuc
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
WLI72606
LinkDB
All DBs
Position
2658874..2660955
Genome browser
AA seq
693 aa
AA seq
DB search
MTNADQSLLDEVARLRAELDDANHRYYVLDDPSLTDADYDRRLRRLQELEAAHPALVTPD
SPTQRVGAPPDAGFPEIEHAVPMLSLDNAFSEEELAAFVARVAERLEVEGDAIAFCCEPK
LDGAAVSLVYEEGVLITGATRGDGRTGEGITSNLRTLRSIPLRLRGDAPPALLEVRGEVT
IDHASFEAMNARARAEEAKVFANPRNAAAGSLRQLDPRVTATRPLTFSAYQVARIEPPQG
DATHSALMAHLGDFGFRTSRELAVVTGAAGIIDYCRRLGEKRDGLDYDIDGVVIKVDDLR
LQRELGFVARAPRWAIAFKFPAQEQTTRLNDVEFQVGRTGAITPVARLEPVSVAGVTVSN
ATLHNADEIARLGVMIGDTVAIRRAGDVIPQVVRVMKELRPSDAREIVFPERCPVCEAEI
ERLEGEVVARCSGGLYCAAQRKEALKHFASRRALDIDGLGEKLIEALVERDWVTTPADLF
RLEAERLAELPRMGAKSSENLVAALAKARATTLARFIYALGIREVGEATAANLARHFGTL
EALMSAEQADLEAVEDVGPIVAAHVHTFFRQPHNRETVDDLIACGLRWEEEAVGERPQPL
AGQTWVLTGTLASMTRDEGKARLQALGAKVAGSVSKKTAGLVAGEAAGSKLEKAMQLGVP
VLDEAAFLERLAAWEAGERERASHQGSDEEGEA
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgaccaacgccgatcagtcgcttctcgacgaggtggcgcgcctgcgcgccgaactcgat
gacgccaaccatcgctactacgtgctcgatgacccgagcctcaccgacgccgactatgac
cgccggctgcggcgcctgcaggagcttgaggcggctcatccggcgctggtgaccccggac
tcccccacccaacgggtcggggcgccgccggacgcgggatttcccgagatcgagcacgcg
gtgccgatgctgtcgctggacaacgccttcagcgaggaggaactggccgccttcgttgcc
cgggtggcggagcggctggaggtggagggcgacgcgatcgccttctgctgcgagccgaag
ctcgacggtgccgccgtctccctggtctacgaggaaggcgtgctgatcaccggggctacc
cgtggcgatggccgcaccggcgagggcatcacctccaacctgcgcaccctgcgctccatc
ccgctgcggctgcgcggcgacgctcccccggccctgctcgaggtgcgcggcgaggtgacc
atcgatcacgccagcttcgaggcgatgaatgcccgggcccgggccgaggaggccaaggtc
ttcgccaacccccgcaacgccgccgccggcagcctgcgccagctcgaccccagggtcacc
gccacccgcccgttgaccttcagcgcctaccaggtggcacgcatcgaaccgccccagggg
gatgccacccacagcgcgctgatggcccacctcggcgacttcggctttcgcaccagccgg
gagctggctgtcgttacgggcgcggcggggatcatcgactactgtcggcgcctcggcgag
aagcgcgacgggctggactacgacatcgacggcgtggtgatcaaggtcgacgacctgcgc
ctgcagcgcgaactgggcttcgtggcccgggcgccgcgctgggccatcgccttcaagttt
cccgcccaggagcagaccacccggctcaacgacgtggagttccaggtgggacgcaccggc
gccatcaccccggtggcccgcctcgagccggtctcggtggccggggttaccgtctccaac
gccaccctgcacaatgccgacgagatcgcgcggctcggcgtcatgatcggcgacaccgtg
gccattcgccgcgccggcgacgtgattccccaggtggtgcgggtaatgaaggagctgcgg
ccctccgatgcccgcgagatcgtctttcccgagcgctgcccggtgtgcgaggccgagatc
gagcgcctcgagggcgaggtggtggctcgctgctccggcgggctctactgtgccgcccag
cgcaaggaggcgctcaagcatttcgcctcgcgccgtgcgctggatatcgacgggctcgga
gagaagctgatcgaggcgctggtcgagcgcgactgggtcaccaccccggcggatctcttt
cgcctggaggccgagcgcctggcggagctgccgcgcatgggggcgaagtcctcggagaac
ctggtggcggccctggccaaggcccgggccaccaccctggcgcgtttcatctatgccctg
gggatccgcgaggtgggcgaggcgacggcggccaacctggcgcgccacttcggcaccctg
gaggcgctgatgagcgccgagcaggccgatctcgaggcagtggaggatgtgggccccatc
gtcgccgcccacgtgcataccttcttccgtcagccccacaaccgcgagaccgtcgacgac
ctgatcgcctgcggcctgcgctgggaggaggaggcggtgggcgaacggccgcagccgctg
gccggccagacctgggtgctcaccggcaccctggcgagcatgacccgcgacgagggcaag
gcgcggctgcaggcgctgggcgccaaggtggccggcagcgtctccaagaagaccgcgggt
ctggtggccggggaggccgccggcagcaagctggagaaggcgatgcagctcggcgtgccg
gtgctcgacgaggcggccttcctcgagcggctggccgcctgggaggccggcgaacgcgaa
cgcgccagccaccagggtagcgacgaggagggcgaagcatga
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