Natrinema halophilum: HYG82_12525
Help
Entry
HYG82_12525 CDS
T06745
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
haly
Natrinema halophilum
Pathway
haly03030
DNA replication
haly03410
Base excision repair
haly03420
Nucleotide excision repair
haly03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
haly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HYG82_12525 (ligA)
03410 Base excision repair
HYG82_12525 (ligA)
03420 Nucleotide excision repair
HYG82_12525 (ligA)
03430 Mismatch repair
HYG82_12525 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
haly03032
]
HYG82_12525 (ligA)
03400 DNA repair and recombination proteins [BR:
haly03400
]
HYG82_12525 (ligA)
Enzymes [BR:
haly01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HYG82_12525 (ligA)
DNA replication proteins [BR:
haly03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HYG82_12525 (ligA)
DNA repair and recombination proteins [BR:
haly03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HYG82_12525 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HYG82_12525 (ligA)
MMR (mismatch excision repair)
DNA ligase
HYG82_12525 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HYG82_12525 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
HHH
DNA_ligase_ZBD
RUBY_RBDX
PTCB-BRCT
5_3_exonuc
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
QLG49626
UniProt:
A0A7D5GTW0
LinkDB
All DBs
Position
2612692..2614776
Genome browser
AA seq
694 aa
AA seq
DB search
MAAADENADEDNPYLQDPPTDFAPVADLSEDEAERQVELLREAIREHDRRYYVESEPLIA
DRTYDALFARLRDLEEAFDLSHPDSPTRAVGGEPLEEFETVSHVAPMLSIDQSGEAEDVR
EFGDRVEREVGSVRYVCEPKFDGISIEFVYEDGRLERAVTRGDGREGDDVTRNARTIGSV
PQRLHGDYPDFLAVRGEVYMPKDAFQQHNRERIERGDEAFANPRNATAGTIRQLDPSVVA
ERPLEVFFFDVLEASELEDSHWSELERFSTYGLRTNDRVEMVDGVEGAIDYRDRLLEVRD
DLDYEIDGVVLKVDSRDAREELGRTARHDRWAFAYKFPARAEVTRIADVAVQVGRTGRLT
PVALLEPVDVGGVTVSRASLHNPEEIAEKNVNVGDTVRVQRAGDVIPYVEEVVEKGSEGH
YEMPDTCPVCGSPVERDGPIAFCTGGLGCDAQLRRSIEYYAGDDGLDLEGLGEESVRQLV
DAGLLTTVADLYELDREDLTDLEGWGETSAENLLAEIDASREPALADFISAMGIPHVGPT
TARELAREFGRFDAFRQVAEEEPDRLEGVDDVGETVAETIHDFFTSEANAAVVDDVLGHV
IPQEAAVDTGGDELEGLTFVFTGSLEDVTRSEAQELVEAHGANATSSVSGNTDYLVAGDN
PGATKREDADANDVPIVDEDEFRALLADEGIDLA
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgccgacgagaacgcggacgaagacaatccctatctccaggatccgccgacg
gacttcgcgccggtcgcggacctctccgaggacgaagccgagcggcaagtggaactgctt
cgggaggccattcgcgagcacgaccgccggtattacgtcgagagcgagccgttgatcgcc
gaccgaacctacgacgcgctgttcgctcggttgcgcgacctcgaggaggccttcgacctc
tcccatcccgacagcccgactcgagccgtcgggggggagcccctcgaggaattcgagacg
gtctcccacgtcgcgccgatgctctcgatcgaccagagcggggaggccgaggacgtccgg
gaattcggcgatcgggtcgagcgggaagtcggatccgtccggtacgtctgtgaacccaaa
ttcgacggaatctccatcgagttcgtgtacgaggacgggcgcctcgagcgcgcggtcacc
cgcggggacggccgcgagggcgacgacgtcacccgtaacgcccgcaccatcggttccgtc
ccgcagcggcttcacggcgactatcccgacttcctggcggttcgcggcgaggtctacatg
cccaaagacgccttccagcagcacaaccgcgagcgcatcgaacgcggcgatgaggcgttt
gcgaacccgcgcaacgccaccgccggaacgatccgacagctcgatccctcggtcgtcgcc
gagcgcccgctcgaggtcttcttcttcgacgtcctcgaagcgagcgaactcgaagactcc
cattggagcgagctcgaacgcttctccacgtacggcctgcggacgaacgaccgcgtcgag
atggtggacggtgtcgagggtgcgatcgactatcgcgatcggctgctcgaggtacgcgac
gacctggactacgaaatcgacggggtcgtcctcaaggtcgattcccgagacgctcgcgag
gaactcggccggacggcccgccacgaccggtgggcgttcgcctacaagttccccgctcgc
gcggaggtcacgaggatcgccgacgtggcggtccaggtcggacggacgggccgtctgacg
cccgtcgccctgctcgaaccggtcgacgtcggcggcgtcaccgtgtcgcgagcgagcctc
cacaatcccgaggagatcgccgagaagaacgtcaacgtgggcgacaccgtccgcgtccaa
cgcgcgggtgacgtcatcccgtacgtcgaggaagtcgtcgagaaagggagcgagggccat
tacgagatgcccgacacctgtcccgtctgcggcagtcccgtcgaacgcgacggtcccatc
gcgttctgtaccggcggcctgggctgtgacgcccagctgcggcgttcgatcgagtactac
gcgggcgacgacggtctcgacctcgaggggctcggcgaggagagcgtccgccagctcgtc
gacgccggcctgctcacgaccgtcgcggacctgtacgaactcgaccgggaggacctcaca
gacctcgaagggtggggcgaaaccagcgccgagaatttgctcgcggagatcgacgccagt
cgcgaaccggcgctggccgacttcatatccgccatggggattccccacgtcggcccgacg
acggcccgcgaactggcccgcgagttcggccggttcgatgcgttccgccaggtcgccgag
gaagagcccgaccgactcgagggcgtcgacgacgtgggcgaaacggtcgccgagacgatc
cacgatttctttacgagcgaggccaacgcagccgtggtcgacgacgtactcggtcacgtc
atcccacaggaagccgcagtcgataccggcggcgacgaactcgagggactcacgttcgtt
ttcaccggctcgctcgaagacgtgaccagaagcgaagcccaagagctcgtcgaagctcac
ggcgcaaacgcgacgagcagcgtctcgggcaacacggactacctcgtcgccggcgacaat
cccggtgcgacgaagcgcgaagacgccgatgccaacgacgtccccatcgtcgacgaggac
gagttccgggcgctgctcgcagacgagggaatcgacctcgcgtag
DBGET
integrated database retrieval system
