Halomonas sp. R57-5: HALO3814
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Entry
HALO3814 CDS
T04029
Name
(GenBank) DNA ligase-Polydeoxyribonucleotide synthase [NAD(+)]
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ham
Halomonas sp. R57-5
Pathway
ham03030
DNA replication
ham03410
Base excision repair
ham03420
Nucleotide excision repair
ham03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ham00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HALO3814
03410 Base excision repair
HALO3814
03420 Nucleotide excision repair
HALO3814
03430 Mismatch repair
HALO3814
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ham03032
]
HALO3814
03400 DNA repair and recombination proteins [BR:
ham03400
]
HALO3814
Enzymes [BR:
ham01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HALO3814
DNA replication proteins [BR:
ham03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HALO3814
DNA repair and recombination proteins [BR:
ham03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HALO3814
NER (nucleotide excision repair)
GGR (global genome repair) factors
HALO3814
MMR (mismatch excision repair)
DNA ligase
HALO3814
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HALO3814
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
DZR_2
Motif
Other DBs
NCBI-ProteinID:
CEP37496
UniProt:
A0A0D6ECK6
LinkDB
All DBs
Position
I:complement(4171548..4173581)
Genome browser
AA seq
677 aa
AA seq
DB search
MSQSDSQPLEEITQLRAALDEANYRYYVLDEPTLTDADYDRKFQRLQQLESEHPERVTPD
SPTQRVGAAPADGFPSVAHAIPMLSLDNAFSRDDIHAFAERVAERLECAADDVEFTCEPK
LDGAAVSLVYEQGVLVSGATRGDGRTGEGITSNLRTLRSVPLKLLGKNVPALLEVRGEVI
MRHAGFEALNERARQEDSKVFANPRNAAAGSLRQLDPRITAKRPLEFHAYQAARLEPDLG
DATHSELMKRLATLGFRASSELKVVKGPQAVADYCEQLGEKRDGLGFDIDGVVIKVNDLR
HQRELGFVARAPRWAVAFKYPAQEEVTTLNDVEFQVGRTGAITPVARLEPVTVAGVTVSN
ATLHNADEIKRLDVMIGDTVSIRRAGDVIPQVVSVHTELRPADARAIVFPEHCPVCGSDI
ERLEGEAVARCSGGLYCAAQRKEALKHFASRKALDIDGLGEKLIVQLVDLDWVETPAALF
HLTVEQLQSLPRMGEKSATNLVNALETAKSTTLARFIYALGIREVGEATAANLANHFGTL
DAIQAAELEALEAVNDVGPIVAAHVHTFFRQPHNQQTIAALIDAGITWQEAEVTQGPTPL
EGQTWVLTGSLESMTRDEGKARLQALGAKVAGSVSKKTTCLVAGEAVGSKLTKAEQMGVE
VVDEATFIERLAEWEQR
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagtctgattcacaaccgctggaagagattacccaactgcgggccgccctggac
gaggccaactaccgttactacgtgctcgatgaaccgacgctcacagatgccgactacgat
cgcaaatttcagcgcttgcagcagttggagagcgaacatccagaacgggtcacgcctgac
tcgccaacccagcgcgttggcgctgcccccgcggatggctttccctcggtagcccatgcg
atccccatgctgtcgctggataatgcctttagccgtgacgatatccacgcctttgccgag
cgagttgccgagcgccttgaatgcgccgcagacgacgttgagtttacctgcgagccaaaa
ttggatggcgcagccgtctcgctagtctacgaacagggcgtactggtaagcggggcaacg
agaggcgatggccgtaccggggaaggtattacctctaacctgcgcacgctgcgctcggta
ccgttaaagctgctgggcaaaaacgtgcctgcgctgctcgaagtgcggggcgaggtgatt
atgcgccatgcgggttttgaagccctgaacgagcgtgcccggcaagaggacagtaaggta
tttgccaacccgcgcaacgcggcggcgggcagcctgcgtcagctagacccgcgcatcacc
gctaaacgtccgctagagtttcacgcctaccaggctgcgcgcttggagccggatctgggc
gatgcgactcacagtgaattaatgaagcggttagccacgctaggctttcgtgccagttca
gagcttaaagtcgtcaaaggcccccaagccgttgctgactactgcgagcagttaggcgag
aagcgcgacggtctagggttcgatatcgatggcgtggtgatcaaggtgaatgacctgcgc
caccagcgtgaacttggctttgttgcccgcgcgccacgctgggcggtggcgttcaagtat
ccggctcaggaagaggtcaccaccctgaacgatgtggaatttcaggttggccgcaccggg
gcgattactcccgtggcgcgacttgaaccagtcaccgtggccggtgtgacggtttctaac
gccacgctgcacaacgctgatgagattaagcgcttagacgtaatgattggtgatacggtc
tcgattcgccgggccggtgatgtaattccccaagtggtgagtgtccataccgagctgcgc
ccagcggatgcaagggcgattgtttttcccgaacactgccccgtgtgcggttcggatatc
gagcgccttgaaggcgaagcggtggcgcgctgttccggcggtctttattgcgcggcgcag
cgcaaagaggcgctaaagcacttcgccagccgtaaagcgctggatattgacggcctgggc
gaaaagttgatcgtgcagttggtcgatttggactgggtggaaacccccgcggcgctgttc
cacttaaccgtcgagcagttgcaaagcctgccgcgtatgggcgagaagtccgccactaac
ttggtcaacgcgcttgaaaccgctaagtcgaccaccttggcgcggtttatttatgcgtta
ggaattcgtgaagtaggcgaggccacagcggccaacctggccaatcactttggtacccta
gacgccattcaagccgctgagttggaagcgctggaagcggttaacgatgtcggcccgatt
gttgccgcccatgtgcataccttctttcgtcagccccacaatcagcaaaccattgccgcg
ctgattgacgcaggcattacctggcaagaagcggaagtcacccagggcccaacgccactg
gaaggccagacctgggtgctcaccggctcgctggagagcatgacccgcgatgaaggtaag
gcgcggctgcaggcgctgggtgctaaggtggcaggcagcgtatcgaaaaagaccacctgt
ttggttgctggcgaagcggtgggcagtaaactgaccaaagccgaacagatgggcgtggaa
gtcgtcgacgaagctacctttattgaacgtttggcagagtgggagcagcgctaa
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