Homarus americanus (American lobster): 121874460
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Entry
121874460 CDS
T07477
Name
(RefSeq) agrin-like isoform X1
KO
K06254
agrin
Organism
hame
Homarus americanus (American lobster)
Pathway
hame04512
ECM-receptor interaction
hame04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hame00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121874460
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
121874460
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
hame00535
]
121874460
Proteoglycans [BR:
hame00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
121874460
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Kazal_2
Laminin_G_1
Laminin_G_2
Kazal_1
Kazal_CFAI
EGF_laminin
EGF
Laminin_G_3
EB
EGF_Teneurin
hEGF
Motif
Other DBs
NCBI-GeneID:
121874460
NCBI-ProteinID:
XP_042234509
LinkDB
All DBs
Position
Unknown
AA seq
1470 aa
AA seq
DB search
MYGGGGLMGSPASSSPVCGSDGQDYDHECQLRQHACRTRRHLEVKYLGKCDPCDDVKCPE
KQTCQLDRERKPTCRCNDVCAKEFNPICASDGKTYTNECVKKVEACKARKSLAIVYRGAC
DAGLNPCDGLSCLPGEECKIDTFGIARCECPPACEPVVRPICGSDRQTYDNLCELQRTVC
VKQVDIVVSYIGVCGEEGPCAGHVCGHGGVCVERQGRPVCECPQCPAHLDPVCGSDGISY
DNECHLRAEACRIRHDIPVRYRGRCFDVRENVEPSAGCENKQCEFYGVCEADEAGVGRCV
CPEGCVKVDSKVCGTDGVTYLNECLLKVAACRKQQFVIVASRGDCDLCQHVVCKYGARCE
AGRCVCPMQCPATREPVCASNGLTFVNECEMQKAACGVEDGLRVNFVGDCSEARPSGVKD
DPSLVSPRDSSPPPVVVGPPGRAHPVGHHGIEGDVCTGMTCEYGSTCTVLGDGLPRCSCR
LDCSNVPQSPVCASDLKMYSSECLMIREGCQRQVELRLRPLELCEDFELTPCNGDEPLVN
PATGRDFYCGKGPDTENCPTGSYCHWTLSFAKCCPLHQEENKTEAGPSCQQAPYGCCPDR
RTDALGPNYAGCPSICQCHKLGAREETCDPVTNQCRCKPGVGGTKCDRCEPGFWGLPRIQ
RGSKGCLPCGCSLFGSVRDDCEQMTGQCVCKPGIRGKKCNGCPDGLVLGPKGCRHHSETT
PPPRSCAELECYFGARCQEHNGHADCKCEAQCPEDSSAAPTVCGSDGETYASECHLRLFA
CHYQKDVVVDALGPCSLPGNQSDGVTESPLRRSTAPLSTEPHRAETAKATRHLLQPEYVV
GSGTGSSTHSLSNSIFSVPPTPVTIAAFGLLGSICYRDKDCSVPYSRCKSSICTCRGGFT
QSADRQTCVVNTPGREEVVGACSRQPCQRGGTCRELPDGSHSCDCPPRATGSQCEEELPP
PYEIPSFSGSSYLEVKKIKAYNKVQVELEFRTFTDSGILLYSQQQKDGSGDFLSLALVNG
FVEFRYNLGSGPALIRSHERVQMKRFHRVVAKRYQRDGILQLDESEDAIGKAPGNLKSLD
LRGSTYIGYVPTNERRVWENTGTAEGLVGCLRSVRINGRPLDLIWPGSPHVVRAEHVGEC
SASPCASLPCLNQGSCRPTDDGHFKCLCIQGYTGERCEVRLDPCESQPCQAGATCMSLPS
EGFHCRCPPGRTGTLCDQMDRTLREVVIPDFDGDAYLELPTLENVGNSLALEIWFLTRSP
DGVLLYNGQMGGGGDFIALNLRNGHVEFSYNLGSGLATLVFRLKSPSRVALNTWHVVRVR
RKKRRGILRVNQGRRVMGKSGPRLKELNLNQPLYLGGLENYTMAHSDSGVIMGLNGAIQR
LLVNSEVLDNLDERATGGRGVRRYRGPPCQLNPCENGGVCQPFRNRFLCKCPATYTGKFC
EKYVDEEQMMKPVKFDGKTFLKFPNMVYRM
NT seq
4413 nt
NT seq
+upstream
nt +downstream
nt
atgtacggaggaggtgggttgatggggtcgccggcctcgtcatccccagtgtgtggttcc
gacggccaagactacgaccatgaatgccagcttagacaacacgcctgcagaacccgacga
cacctggaagtcaagtatctgggaaaatgcgacccgtgtgatgacgtgaaatgtccagag
aaacagacttgccagctggatcgagagagaaaacccacctgccgttgcaatgacgtctgc
gccaaggaattcaaccccatctgtgcctccgatggcaagacttacacgaacgagtgcgtg
aagaaggtggaggcgtgcaaggcgaggaaatctctggccatcgtctatagaggtgcctgt
gacgctggactgaacccttgtgatgggctgtcctgcctgcccggtgaggaatgcaaaatc
gacacgtttgggatcgcgcgctgtgagtgtcccccggcgtgtgagcctgtcgtccgccct
atttgcggctcagacagacagacatacgacaacttgtgtgaactgcagcgaactgtgtgt
gtcaagcaggttgatattgtggtcagctacatcggggtgtgcggagaggaaggcccctgt
gcaggccatgtatgtgggcacgggggcgtgtgtgtggaacggcagggacgacccgtgtgt
gagtgcccacagtgtcccgcccaccttgaccctgtgtgtggctctgatggcatatcctac
gacaacgagtgtcatctgagggctgaggcgtgcagaatacgccacgacatacccgtcaga
tacagaggacgttgttttgacgtgagggaaaacgtcgaaccttcagctggttgcgagaac
aaacaatgtgaattctacggtgtgtgcgaggcagacgaggcgggtgtagggcgatgtgta
tgccccgaaggatgcgtcaaggttgacagcaaagtgtgtgggacggatggtgtgacttac
ctcaacgagtgcctcctgaaagtggctgcctgtaggaagcagcagtttgttatcgtggct
tccaggggtgactgtgatctatgccagcacgtagtgtgtaaatacggagcgaggtgtgag
gcagggcggtgtgtgtgtcccatgcagtgccctgcgacccgtgagccagtgtgtgcatcc
aacggcctcaccttcgtcaacgagtgcgagatgcagaaagcagcgtgtggggtggaggat
ggtttacgagtcaactttgtcggggactgttcagaggcgcgaccttctggcgtcaaggat
gacccaagcctggttagtccccgcgactcgtcccctcctccggtggtcgttggtccccct
ggccgcgcccaccctgttggccaccacggcatcgagggggatgtgtgcacggggatgacg
tgcgagtacggctcgacgtgcacagtgctgggggacggcctgccccgctgctcgtgccgg
ctggactgctccaacgtgccccagagccccgtgtgtgcctccgacctcaagatgtactcc
agcgagtgtctcatgatcagggaggggtgtcagcggcaggtggagctgagactgaggccc
cttgagctgtgtgaagacttcgagctgacgccctgcaacggggacgagcccttggtgaac
cctgccactgggcgagacttctactgcgggaaggggcctgacacagagaactgccccacc
ggttcctactgccattggactctctccttcgccaagtgctgccctctacatcaagaggag
aataagacggaagcaggcccctcatgccaacaggccccctatggttgctgccctgaccgt
aggaccgatgccctgggaccaaactatgccggttgtccttctatctgccaatgccacaag
ctcggtgcccgggaagagacatgcgaccctgtaaccaaccagtgccggtgtaagcctggg
gtgggcggcaccaagtgtgaccgctgtgagcctggcttctggggtcttcctagaatccag
agaggcagcaagggatgtctaccatgtggctgctctctgtttggttctgtgcgtgatgac
tgcgaacagatgacagggcagtgtgtgtgtaaaccagggatccggggtaagaaatgcaat
ggatgccctgatggcttagtgctgggccccaaaggatgtcggcaccacagtgagaccaca
cccccaccccgctcctgtgccgaactggagtgttactttggtgctcgctgccaggaacac
aacggtcatgcagattgtaagtgtgaagcgcaatgccctgaggactcatcagcagcgcct
actgtctgcggctctgacggggagacgtatgccagcgagtgtcacctgagactatttgca
tgtcactaccagaaggatgtggtggttgatgccctgggtccgtgttccctaccaggcaac
cagtctgatggtgtgacggagtccccgctgcgtcgctccactgcccccctgtccacggag
ccacaccgggcggagacagcgaaggccacgcgtcacctgctgcagccggagtatgtagtg
ggcagtgggactggctccagcacccacagcctctccaacagcatcttcagtgtgccgccc
acgcctgtcaccatagccgccttcgggctgctgggctccatctgttaccgggacaaggac
tgttccgtaccatactcccgctgcaagtcttccatctgtacctgccgtggtgggttcacg
cagagcgccgatcgtcagacgtgtgtagtcaacaccccagggagggaggaggtggtgggg
gcatgtagccgtcagccctgccagagaggaggtacgtgtcgagaattacccgacggaagc
cactcctgcgactgtcccccgagagccacaggttcccagtgcgaggaggagctgccacca
ccctatgaaattccttcctttagtgggtcttcctacctggaggtgaagaagatcaaggct
tacaacaaagtccaggtcgagctggagttccgaaccttcacagacagtgggattctgctc
tacagccagcagcagaaggatggctctggcgacttcctctcactggccctcgtcaacggg
tttgttgaatttcgatacaacttagggtcaggacctgccctcatccgcagccatgaacgg
gtacaaatgaagcgcttccatagggtggtggccaagaggtaccagcgagatgggatcctg
cagctggatgagtctgaggatgctattggcaaggctccagggaaccttaagagcctagac
ctgcgtggctcaacatacattggttacgtccccaccaatgagagacgagtgtgggagaac
acaggcacagcagagggcctggttgggtgccttcgttcagtgaggatcaacggacgacca
ctagacctgatatggccgggctccccacatgtggtgagggcagagcatgtgggcgaatgt
tctgcctcaccatgtgcctctctcccctgcctcaaccagggctcctgcagacctactgat
gatggtcactttaagtgtctctgcatacagggatatactggagagcgatgtgaggtgcgt
ctggacccgtgtgagagccaaccatgtcaggcgggagccacttgcatgtccttaccctcc
gagggcttccactgcaggtgtccaccaggcaggactggaaccttgtgtgaccagatggac
cgcaccctccgtgaggtagtcatccctgactttgacggtgatgcctacttggaactcccg
accctggagaatgtgggcaactcactagctttggagatctggttcctcaccagatcacca
gatggtgtactgctctacaatggacagatgggtggaggaggagacttcattgcacttaat
cttcgcaatggacatgtcgaattttcgtacaacctcggttctggtctcgcaactttagta
ttcaggctgaagagccctagccgtgtggcgctgaatacatggcatgtggtacgtgtgagg
cgcaagaagagacgtggcatccttcgagtcaatcaaggccgaagagtcatgggcaaaagt
ggacccaggttaaaagaactgaacctcaaccagccactctatctcggaggactggagaat
tacacgatggcacattcagattctggtgtcatcatgggcctcaacggagccatacagcgt
ctccttgtcaactctgaggtcttggacaacttggatgagcgagccacaggtggacgaggt
gtccgcagataccgaggccccccttgccagcttaatccatgtgaaaatggtggagtctgt
cagcccttccgcaacaggttcctctgcaaatgccctgcaacctacactgggaagttctgc
gagaaatatgttgatgaggaacaaatgatgaaaccagtcaagtttgatggcaagactttc
ctcaagttccccaacatggtgtatagaatgtaa
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integrated database retrieval system
