KEGG   Hyperoodon ampullatus (northern bottlenose whale): 307050706
Entry
307050706         CDS       T11951                                 
Symbol
LOC307050706
Name
(RefSeq) E3 ubiquitin-protein ligase RBX1-like
  KO
K03868  E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
Organism
hamp  Hyperoodon ampullatus (northern bottlenose whale)
Pathway
hamp03420  Nucleotide excision repair
hamp04066  HIF-1 signaling pathway
hamp04110  Cell cycle
hamp04114  Oocyte meiosis
hamp04120  Ubiquitin mediated proteolysis
hamp04141  Protein processing in endoplasmic reticulum
hamp04310  Wnt signaling pathway
hamp04350  TGF-beta signaling pathway
hamp04710  Circadian rhythm
hamp05170  Human immunodeficiency virus 1 infection
hamp05200  Pathways in cancer
hamp05211  Renal cell carcinoma
Brite
KEGG Orthology (KO) [BR:hamp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    307050706 (LOC307050706)
   04120 Ubiquitin mediated proteolysis
    307050706 (LOC307050706)
  09124 Replication and repair
   03420 Nucleotide excision repair
    307050706 (LOC307050706)
 09130 Environmental Information Processing
  09132 Signal transduction
   04310 Wnt signaling pathway
    307050706 (LOC307050706)
   04350 TGF-beta signaling pathway
    307050706 (LOC307050706)
   04066 HIF-1 signaling pathway
    307050706 (LOC307050706)
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    307050706 (LOC307050706)
   04114 Oocyte meiosis
    307050706 (LOC307050706)
 09150 Organismal Systems
  09159 Environmental adaptation
   04710 Circadian rhythm
    307050706 (LOC307050706)
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    307050706 (LOC307050706)
  09162 Cancer: specific types
   05211 Renal cell carcinoma
    307050706 (LOC307050706)
  09172 Infectious disease: viral
   05170 Human immunodeficiency virus 1 infection
    307050706 (LOC307050706)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:hamp04121]
    307050706 (LOC307050706)
   03400 DNA repair and recombination proteins [BR:hamp03400]
    307050706 (LOC307050706)
Enzymes [BR:hamp01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.32  cullin-RING-type E3 NEDD8 transferase
     307050706 (LOC307050706)
Ubiquitin system [BR:hamp04121]
 Ubiquitin ligases (E3)
  UBL E3 ligases
   307050706 (LOC307050706)
  Multi subunit type E3
   SCF complex
    Ring finger protein
     307050706 (LOC307050706)
   Cul2 complex
     307050706 (LOC307050706)
   Cul3 complex
     307050706 (LOC307050706)
   Cul4 complex
     307050706 (LOC307050706)
   Cul7 complex
     307050706 (LOC307050706)
   Cul8 complex
     307050706 (LOC307050706)
   Cul9 complex
     307050706 (LOC307050706)
DNA repair and recombination proteins [BR:hamp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      307050706 (LOC307050706)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      307050706 (LOC307050706)
SSDB
Motif
Pfam: zf-rbx1 zf-ANAPC11 zf-RING_2 zf-C3HC4 DUF8003 zf-C3HC4_2
Other DBs
NCBI-GeneID: 307050706
NCBI-ProteinID: XP_079557022
LinkDB
Position
3:<137997636..137998084
AA seq 108 aa
MAAAMDVDTPSGTNSGAGKRRFEVKKCNAVALWAWDIVVDNGAICRNHIMDLCIECQANQ
ASATSEECTVAWGVCNHAFRFHCISRWLKTRQVCPLDNREWEFQKYGH
NT seq 327 nt   +upstreamnt  +downstreamnt
atggcggcagcgatggatgtggataccccgagcggcacgaacagcggcgcgggcaagagg
cgctttgaagtgaaaaagtgtaatgcagtagccctctgggcctgggatattgtggttgat
aacggtgccatctgccggaaccacattatggatctttgcatagagtgtcaagccaaccaa
gcgtctgctacttctgaagagtgcaccgttgcgtggggagtctgtaaccatgcctttcgc
ttccactgcatctcccgctggctcaaaacacgacaggtgtgtccgttggacaacagagag
tgggaattccaaaagtatgggcactag

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