Halomonas sp. M1: P8S55_15075
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Entry
P8S55_15075 CDS
T10932
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hamz Halomonas sp. M1
Pathway
hamz03030
DNA replication
hamz03410
Base excision repair
hamz03420
Nucleotide excision repair
hamz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hamz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
P8S55_15075 (ligA)
03410 Base excision repair
P8S55_15075 (ligA)
03420 Nucleotide excision repair
P8S55_15075 (ligA)
03430 Mismatch repair
P8S55_15075 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hamz03032
]
P8S55_15075 (ligA)
03400 DNA repair and recombination proteins [BR:
hamz03400
]
P8S55_15075 (ligA)
Enzymes [BR:
hamz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
P8S55_15075 (ligA)
DNA replication proteins [BR:
hamz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
P8S55_15075 (ligA)
DNA repair and recombination proteins [BR:
hamz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
P8S55_15075 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
P8S55_15075 (ligA)
MMR (mismatch excision repair)
DNA ligase
P8S55_15075 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
P8S55_15075 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
WFE71091
LinkDB
All DBs
Position
3294975..3297011
Genome browser
AA seq
678 aa
AA seq
DB search
MSQTDPRLLEEISQLRADLDDANYRYYVLDEPKLTDADYDRKLQRLTQLEAEHPTLISPD
SPTQRVGAAPAEGFPEVAHAIPMLSLDNAFSRDDVVAFAERVAERLECDATEIEFSCEPK
LDGAAVSLVYEQGVLVIGATRGDGRTGEGITSNLRTLRSVPLKLMGKDLPELLEVRGEVI
MRHAGFEALNDRARDEDSKVFANPRNAAAGSLRQLDPRITATRPLEFHAYQAARLQPDMG
DTTHSALMARLSVLGFRTSAELSTMRGPQAVADYCEQLGEKRDQLGYDIDGVVIKVNDLR
HQRELGFVARAPRWAVAFKFPAQEEVTTLNDVEFQVGRTGAITPVARLEPVTVAGVTVSN
ATLHNADEITRLGVMIGDTVAIRRAGDVIPQVVRVDTDKRPAEARTITFPDHCPVCGSDI
ERLKGEAVARCSGGLYCAAQRKEALKHFASRKALDIDGLGEKLIEQLVDLDWVKTPADLF
HLTAGQLQSLPRMGEKSSTNLVNALDKAKNTTLARFIYALGIREVGEATAANVANHFGTL
QALQDADLTALETVNDVGPIVAAHIHTFFRQPHNLETLQALLDAGITWQESEVTHGPTPL
EGQTWVLTGAMDTMTRDEGKARLQLLGAKVAGSVSKKTSCLVAGEAAGSKLTKAEQLGVE
VIDEATFIERLAAWEQSE
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagactgacccccgtttgcttgaagaaattagccagctccgcgccgatttagat
gatgctaattaccgctactacgtgttggacgaaccgaaactgaccgatgcggactatgac
cgaaagcttcagcgtttaacgcaactagaggcagagcaccctacgctgatatcgccagat
tcgcccacccagcgtgtaggtgctgcaccggcggagggctttcctgaagtcgcccacgct
attcccatgctctcattggataatgcttttagccgtgacgatgtggtggcctttgctgaa
cgggtcgccgagcgcttggagtgtgacgcaacagagattgagtttagctgcgagccaaag
cttgatggcgcggcggtatcgctagtgtatgagcagggcgtattagtgattggcgccacc
cgcggggatggacgcaccggggagggaattacctcgaacttgcgcaccctacgttctgta
ccgttaaaactgatgggtaaagacctacctgaactgttggaagtgcgcggcgaggtgatt
atgcgccatgcgggttttgaggcgcttaatgaccgtgccagggatgaagacagtaaggta
tttgccaacccgcgcaacgccgccgctggcagcttacgccagcttgacccgcgtattacc
gccactcgcccactagagtttcatgcttatcaagcggcacggttgcagcctgatatgggt
gacactacccacagtgcgctgatggcgcgactatcggtgcttgggtttcgcaccagcgcc
gagttaagcactatgcgcggcccccaggccgtcgctgactactgcgaacagctaggcgaa
aagcgtgatcaattgggctatgacattgatggcgttgtgattaaggtgaatgatcttcgt
caccagcgggagcttggctttgtggcccgtgccccgcgctgggcagtagcgtttaaattt
cctgcccaggaagaggtcaccacgctgaatgatgtagagtttcaggtgggtcgcaccggg
gctattacgccggtcgcgcggcttgagccggtcacggttgccggcgtaacggtatccaac
gcgacactacataacgccgatgagatcacccgtctgggtgtgatgattggcgataccgtc
gctattcgccgtgcaggggatgttattccacaggttgtgcgggtggataccgataagcga
ccggcagaagcacgcacgattacctttcctgaccactgcccagtgtgcggctcggacatt
gaacgcctgaaaggcgaagcagttgcccgctgctcgggtgggctctactgcgctgcccag
cgcaaagaagcgctaaagcacttcgccagccgaaaggcgctggatattgatgggctgggt
gaaaagcttattgagcagttagtggatctagactgggtgaaaaccccggcagacttgttt
cacctgacggcggggcaattgcaaagcctgccgcgcatgggcgagaagtcgtctactaac
ttggtgaacgcgctggataaggctaaaaataccaccttggcgcggtttatttacgcgttg
ggcattcgtgaggtgggcgaggcgacggcggctaacgtggccaaccattttggaaccttg
caagcgttgcaagacgctgacctcactgcgctagaaacggttaatgatgtggggcctatt
gtggcagcccatattcacaccttcttccgccagccccataacctagagacccttcaagcg
ctgctggatgccggtatcacctggcaagagagcgaagtgacccatgggcccactcccctt
gaagggcaaacctgggtgctgacaggtgccatggacaccatgacccgggacgaaggtaaa
gcgcggctgcaattgctgggggctaaagtggcgggcagtgtctcaaagaaaaccagctgc
ttagtggccggtgaggcagcaggcagcaagttaaccaaagcagagcagctgggcgttgag
gtcattgatgaagcgacgtttattgagcgcctagctgcctgggagcagagcgaatga
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