Helianthus annuus (common sunflower): 110920849
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Entry
110920849 CDS
T05101
Name
(RefSeq) ABC transporter I family member 20
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110920849
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
han03019
]
110920849
Messenger RNA biogenesis [BR:
han03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110920849
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
AAA_15
AAA
SMC_N
AAA_28
Arf
AAA_23
ORC-CDC6-like
Zeta_toxin
nSTAND3
AAA_25
DUF6001
AAA_7
TsaE
AAA_30
ATP-synt_ab
AAA_24
Motif
Other DBs
NCBI-GeneID:
110920849
NCBI-ProteinID:
XP_022020744
LinkDB
All DBs
Position
17:57290927..57294746
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AA seq
324 aa
AA seq
DB search
MVASDNNPTVVINKLKFTYPGIDGHPPPGSVPLIEDFSLTLNAGDRCLLVGSNGAGKTTI
LKILGGKHMVEPEMVRVIGRSAFHDTSLTSSGDLTYLGGEWRREVAFAGFDVAIQMDISA
EKMLFGVSGVNPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKEFKVLLLDEIT
VDLDVLARADLLTFLKKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLASTMEEV
KKMSNLSLMRTVEQWLRKERDEERKRRKERKANGLPEFDRRVDGTRVTGDPVRVVNNGWA
AGRLNSTVAGEENFVYSSNRVIRQ
NT seq
975 nt
NT seq
+upstream
nt +downstream
nt
atggtggccagtgataacaatccaaccgttgtcatcaataaactcaagttcacctaccct
gggatcgacggtcatccgcctcccggttcagttcccctaattgaagatttttcactcaca
ctcaatgctggtgatcgttgtcttcttgttggatctaacggcgctggtaaaacgacgata
ttgaagatattgggagggaagcatatggtggagccggagatggttagggttattggcaga
tcggcttttcatgacacgtcgttgacgtcttctggtgatcttacttatcttggtggagag
tggagaagagaagttgcttttgctgggtttgatgttgcaatacaaatggatatttctgct
gaaaaaatgttatttggcgtatccggggttaatcctcagagaagagctgagctaattaag
gttttagatattgatctgtcatggaggatgcataaggtctctgatggtcagcgaagaaga
gtgcaaatatgcatgggccttctaaaggaattcaaggttcttcttcttgatgaaattacg
gttgacctagatgtacttgccagggctgatcttttgactttcctaaaaaaggaatgtgaa
gagcgcggtgctactattatatatgctacacacatatttgatggccttgagaattggcct
tcacacattgtttacgttgctcatgggaagttgcagttagcatcgactatggaagaagtc
aaaaagatgagcaacctatctttaatgagaacagtagagcaatggctgaggaaagaaaga
gacgaggagagaaagagaaggaaagagcgaaaagcaaacggacttccagaatttgatagg
cgtgttgatggcacgcgggtaactggggacccggttcgtgtggtcaacaacggttgggct
gctggtaggctgaattccacagttgccggtgaagagaatttcgtgtatagttcaaacagg
gttattagacaatag
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