Halobacterium sp. NMX12-1: ABSL23_04320
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Entry
ABSL23_04320 CDS
T10641
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hanx Halobacterium sp. NMX12-1
Pathway
hanx03030
DNA replication
hanx03410
Base excision repair
hanx03420
Nucleotide excision repair
hanx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hanx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABSL23_04320 (ligA)
03410 Base excision repair
ABSL23_04320 (ligA)
03420 Nucleotide excision repair
ABSL23_04320 (ligA)
03430 Mismatch repair
ABSL23_04320 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hanx03032
]
ABSL23_04320 (ligA)
03400 DNA repair and recombination proteins [BR:
hanx03400
]
ABSL23_04320 (ligA)
Enzymes [BR:
hanx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ABSL23_04320 (ligA)
DNA replication proteins [BR:
hanx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ABSL23_04320 (ligA)
DNA repair and recombination proteins [BR:
hanx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ABSL23_04320 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ABSL23_04320 (ligA)
MMR (mismatch excision repair)
DNA ligase
ABSL23_04320 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ABSL23_04320 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
HHH
Nlig-Ia
DNA_ligase_ZBD
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
XCF17247
UniProt:
A0AAU8CDZ4
LinkDB
All DBs
Position
543504..545639
Genome browser
AA seq
711 aa
AA seq
DB search
MADADALEDAPEDNPYVRDPDTDFAPVEDLAEDDAEEQVQLLREAVRYHDYRYYVQNDPV
ISDYAYDELFERLQQLEDAFDLQTEDSPTQRVGGEPVEELGTVEHVAPMLSIDSSGDAAD
VREFAARVEREVGETDFVCEPKFDGLSVEVVYEEGQYVRAATRGDGKTGEDVTENVRTIE
SVPQRLRGDPPDFLAVRGEVYIPREAFQEYNAERVERGEEPFANPRNAAAGTLRQLDPSV
TAERPLDCFFYDVLAAGKSEADVDADASRGGLDAGFDTHWAEHEALPDWGLKVNERTELA
DDVEEAIAFRDDLAAVREDLNYEIDGVVLKVDDRRACVDLGVTSRHYRWAYAYKFPPRAE
VTTIRDVVVQVGRTGRLTPVALLEPVEVGGVTVSRASLHNQAEIAEKGVGIGDDVRVERA
GDVIPYVDEVVESHSEGHFQMPEECPRCGSDVEYDGPIAYCTGGLACPAQLVRAVGYFAD
VLDVEGIGEAAAQQFVEEGLVEDDVADLYELAEADLAELEGWGERSAQNLLVELDAARHP
PLGEFLAAIGIPEVGPTVARALAEHFGTLDALLSADERDIREVEGVGEVVAGHVREFLDN
ERNRRVIERLRDEDRLGEPESPEETGGDELEGLTVVFTGSVEGWTRDDLQDLVVRHGGDA
PSSVSGNTDYLVVGENPGTSKRESADEHDVPELSPGEFFELLDERGVDADR
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgcggacgccctcgaagacgcgcccgaggacaacccctacgtccgagacccc
gacaccgacttcgcgcccgtcgaggacctcgccgaggacgacgccgaagagcaagtacaa
ctgctccgggaggccgtccgctaccacgactaccgctactacgtccagaacgaccccgtc
atctccgattacgcctacgacgagctgttcgagcggctccagcagttagaggacgccttc
gacctccagaccgaggacagccccacgcagcgcgtcggcggcgaacccgtcgaggaactg
gggaccgtcgagcacgtcgcgccgatgctctccatcgactccagcggcgacgcggccgac
gtccgggagttcgccgcccgcgtcgagcgcgaggtcggtgagacggacttcgtctgcgag
ccgaagttcgacgggctctccgtggaagtcgtctacgaggagggacagtacgtgcgcgcc
gccacgcgcggcgacggcaagaccggcgaggacgtcacggagaacgtccgcaccatcgag
agcgtcccccagcgcctgcgcggagacccgccggacttcctcgcagtgcgcggcgaggtg
tacatcccgcgggaggcgttccaagagtacaacgccgagcgcgtcgagcgcggcgaggag
ccgttcgcgaatccccggaacgccgccgccgggacgctgcgccaactcgacccgagcgtc
accgccgaacgccccctcgactgcttcttctacgacgtattggctgcgggaaagagcgag
gcagacgtggatgcggacgcctcgcgcggcggcctcgacgccggcttcgacacgcactgg
gcggaacacgaggcgctccccgactggggattgaaggtcaacgagcgcaccgaactcgcc
gacgacgtcgaggaagccatcgcgttccgcgacgacctcgcggccgtgcgcgaggacctg
aactacgaaatcgacggcgtcgtgctcaaagtcgacgaccgccgggcgtgcgtggacctc
ggggtcacgtcccgccactaccgatgggcgtacgcgtacaagttcccaccacgcgcggaa
gtcacgacaatccgggacgtcgtcgtgcaggtcggccggacaggccggctaacgccggtc
gcgctactcgaacccgtcgaagtcgggggcgtcacggtctcgcgcgcgagcctccacaac
caagccgaaatcgcggagaagggcgtgggcatcggcgacgacgtgcgcgtcgagcgcgcc
ggcgacgtgattccgtacgtcgacgaagtggtcgaatcccacagcgaggggcacttccag
atgccggaggagtgcccgcgctgcgggagcgacgtggagtacgacggccccatcgcgtac
tgcacgggcgggctggcgtgtcccgcgcagttggtgcgcgcggtcggctacttcgcggac
gtcctcgacgtcgagggcatcggcgaggcggccgcccagcagttcgtcgaggaagggctc
gtcgaggacgacgtcgcggacctctacgagctcgcggaggcggacctcgcggaactggag
gggtggggcgagcggagcgcgcagaacttgctcgtggagctggacgccgcgcgccacccg
ccgctgggcgagtttctcgcggccatcggcatccccgaggtcgggccgacggtcgcccgc
gccctcgcggagcacttcgggacgctggacgcgctactttccgccgacgaacgcgacatc
cgtgaggtcgagggcgtcggcgaggtggtcgccggacacgtccgggagttcctcgacaac
gagcgcaaccgccgcgtcatcgagcgcctccgcgacgaggaccgcctcggcgaacccgaa
tcccccgaagagaccggcggcgacgaactggaggggctcaccgtcgtcttcacggggagc
gtcgaggggtggacgcgcgacgacctccaggacctcgtggtgcgccacggcggcgacgcg
ccctcctcggtgtccgggaacaccgactacctcgtcgtcggcgagaaccccggcacgagc
aagcgcgagagcgccgacgagcacgacgtccccgaactctcgcccggggagttcttcgag
ctactggacgagcgcggcgtggacgcggaccgatag
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