Halomonas sp. NyZ770: LG409_14340
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Entry
LG409_14340 CDS
T10914
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hany Halomonas sp. NyZ770
Pathway
hany03030
DNA replication
hany03410
Base excision repair
hany03420
Nucleotide excision repair
hany03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hany00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LG409_14340 (ligA)
03410 Base excision repair
LG409_14340 (ligA)
03420 Nucleotide excision repair
LG409_14340 (ligA)
03430 Mismatch repair
LG409_14340 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hany03032
]
LG409_14340 (ligA)
03400 DNA repair and recombination proteins [BR:
hany03400
]
LG409_14340 (ligA)
Enzymes [BR:
hany01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LG409_14340 (ligA)
DNA replication proteins [BR:
hany03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LG409_14340 (ligA)
DNA repair and recombination proteins [BR:
hany03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LG409_14340 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LG409_14340 (ligA)
MMR (mismatch excision repair)
DNA ligase
LG409_14340 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LG409_14340 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
DUF4796_N
RNA_pol_A_CTD
DZR_2
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
UDM06546
LinkDB
All DBs
Position
complement(3096332..3098368)
Genome browser
AA seq
678 aa
AA seq
DB search
MSSLDPALLEEIGQLRADLDDANYRYYVLDEPTLTDADYDRKLQRLQQIEAEHPDLISPD
SPTQRVGAAPAEGFPEVAHAIPMLSLDNAFSREDIIAFAQRVAERLECQPEEIEFSCEPK
LDGAAVSLVYEQGVLVSGATRGDGRTGEGITSNLRTLRSVPLKLMGGTLPELVEVRGEVI
MCHAGFEVLNQRARDEGSKVFANPRNAAAGSLRQLDPRITATRPLEFHAYQAARLEPEMG
DTTHSALMARLSQLGFKTSTELSVLQGPVAVADYCERLGEKRDQLGYDIDGVVIKVNDLR
HQRELGFVARAPRWAVAFKFPAQEEVTLLNDVEFQVGRTGAITPVARLEPVTVAGVTVSN
ATLHNADEIERLGVMIGDTVAIRRAGDVIPQVVRVDVEKRQAEARAIVFPDQCPVCGSEV
ERLEGEAVARCSGGLYCAAQRKEALKHFASRKAMDIDGLGEKLIEQLVEQDWVKTPAELF
HLTVEQLKSLPRMGEKSATNLVNALEKAKQTTLPRFIYALGIREVGEATAANVANHFGTL
QALQEADTPALEAVNDVGPIVAKHIHTFFRQPHNLDTLDALIAAGVVWQETEVAQGPTPL
EGQSWVLTGAMESMTRDEGKARLQALGAKVAGSVSKKTTCLVAGEAAGSKLTKAEELGVE
VIDEATFIERLSAWEQSE
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgagttcgctagaccccgccctgctagaagagattggccaactgcgcgctgatctggat
gacgccaattatcgctactacgtgctggacgagcccacgctgaccgatgccgactacgac
cgcaagctgcaacgtttgcagcagatcgaggcagaacaccctgacctgatatcgccagac
tcgcccacccaacgagtgggtgcggccccggcggaaggctttccggaagtggcccacgcc
attcccatgctgtcgctggacaacgccttcagccgtgaagacatcatcgccttcgcccag
cgggtggccgaacgcctggagtgccagcccgaggagatcgaattcagctgcgaacccaag
ctggatggcgcagcggtctcgctggtgtacgaacagggtgtgctggtcagcggtgcaacg
cgcggcgatgggcgtacgggcgagggcattacctccaacctgcgtaccttgcgctcggtg
ccgctcaagctgatgggaggcacgttgcccgagctggtggaggtgcgtggcgaggtcatc
atgtgccacgccgggttcgaagtgctgaaccagcgtgcccgagacgagggcagcaaggtg
tttgccaacccgcgtaacgcggcagcaggcagcctgcgccaactcgacccgcgcattact
gcaacgcgaccgctggagttccacgcctatcaggcggcgcggttggagcccgagatgggc
gataccactcatagcgccttgatggccaggctctcccagctggggttcaaaaccagcacc
gagctgagcgtgctgcaagggccagttgccgtggccgactactgtgaacggctgggcgaa
aagcgtgaccagctgggctacgacatcgacggcgtggtgatcaaggtcaacgacctgcgc
caccagcgggagctgggcttcgtggcccgcgcgccacgctgggcggtggccttcaagttt
cctgcccaggaagaggtcacgctgctcaacgacgtggagtttcaggtcggccgtaccggc
gcgattaccccggtggcgcggctggagccggtcacggtggccggggtgaccgtgtccaac
gccacgctgcacaatgccgacgagatcgagcggctgggagtcatgattggcgacaccgtg
gccattcggcgggcgggggacgtgattcctcaggtggtacgtgtcgatgtcgagaagcgc
caagccgaagcccgcgccattgtattccctgaccagtgcccggtgtgtggctccgaggtc
gagcgcctggaaggcgaggcggtggcccgctgttccggcggcctctactgcgcggcgcag
cgcaaggaagcgctcaagcactttgccagccgcaaggccatggacatcgacggcctgggg
gagaaactgatcgagcaactggtcgagcaggactgggtcaagacccccgccgagctgttc
cacctgaccgtcgagcagctcaaaagcctgccgcgcatgggtgaaaagtctgccaccaac
ctggtcaatgcgctggaaaaagccaagcagaccacgctgccacggttcatttacgcactg
ggcattcgtgaggtgggcgaagctaccgctgccaacgtggccaaccattttggcacgctg
caagcccttcaggaggccgacacgcccgcgctggaagcggtcaacgacgtagggcccatc
gtggcgaaacacatccatacctttttccggcagccgcacaacctcgacaccctggatgcg
ctgattgcggcgggggtcgtctggcaggaaaccgaggtggcccaggggcccacgccgctg
gaaggccagtcctgggtgctgaccggcgccatggagagcatgacccgtgacgaaggcaag
gcgcgtttgcaggcgctgggggccaaagtggcgggcagcgtgtccaaaaagaccacctgc
ctggtggccggtgaggccgcgggcagcaagcttaccaaagccgaggaactaggcgtcgaa
gtgatcgacgaagccacctttatcgagcgtttgagcgcgtgggagcagagcgaatga
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