Halothece sp. PCC 7418: PCC7418_0443
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Entry
PCC7418_0443 CDS
T02379
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hao
Halothece sp. PCC 7418
Pathway
hao03030
DNA replication
hao03410
Base excision repair
hao03420
Nucleotide excision repair
hao03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PCC7418_0443
03410 Base excision repair
PCC7418_0443
03420 Nucleotide excision repair
PCC7418_0443
03430 Mismatch repair
PCC7418_0443
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hao03032
]
PCC7418_0443
03400 DNA repair and recombination proteins [BR:
hao03400
]
PCC7418_0443
Enzymes [BR:
hao01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PCC7418_0443
DNA replication proteins [BR:
hao03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PCC7418_0443
DNA repair and recombination proteins [BR:
hao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PCC7418_0443
NER (nucleotide excision repair)
GGR (global genome repair) factors
PCC7418_0443
MMR (mismatch excision repair)
DNA ligase
PCC7418_0443
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PCC7418_0443
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
BRCT_2
HHH_3
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AFZ42673
LinkDB
All DBs
Position
496222..498249
Genome browser
AA seq
675 aa
AA seq
DB search
MNTEQWVNQLRRQLQRANYAYYLQDNPIMEDEVYDRLYRELQALEEKYPELITPDSPTQR
VGGGVSEGFASVKHNIPLYSLENAFDLSELAQWVARWQNQVSEETTVNYVCELKIDGNAL
ALTYENGILVRGVTRGDGETGEEITNNVRTIRTIPLRLDLENPPARVEVRGEAFLPRKTF
EKINQARSENGEARFANPRNATSGTLRQLDPKVVAKRQLDFFAYTLYVIDENTTINPKTQ
AESLESLQEMGFQVNPNHKICQSLKQVGDYYQKWQEEREKLPYETDGVVIKINSYALQEK
LGFTQKFPRWAIALKFPAEEAPTKLKEITVNVGRTGAVTPLAHLEPVSLAGTTVQRATLH
NTDFINELDVRIGDTVVVRKAGDIIPEIVRVLPELRPESAQPFIMPTECPECGSRLVRPE
GEAVTRCVNVSCPAILRGSLVHFASRDAMDINGLGEKMVENLVSQGLVTSVADLYHLTVE
QLTQLERVGKQSASNLVSAIAQSKHQPWSRVLYGLGIRYVGKVNAETLTERFSTVEELAR
ASVEDLKAVEGIGEEIARSVYQWFRIEANQALVKQLQETGLNFQAEATETPPAETTIAQP
FAGKKFVLTGKLKHLTRSEAQQLIERAGGKVSSSVSSKTDYVLVGDKGGSKQKKAQELNI
PQMTEDEFQARTMGL
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
gtgaatactgagcaatgggttaaccaactgcgccgacaattgcaacgggcgaactatgcc
tattatttgcaagataatccgattatggaagatgaagtgtatgatcggctttatcgtgag
ttacaggcgttagaagaaaaatatccagaactcataacaccagatagtccaacccagcgt
gtgggagggggtgtttctgaggggtttgcttcagtgaagcataatattcccctttacagt
ttagaaaatgcctttgatttgagtgagttagcacagtgggtcgcccgttggcaaaatcaa
gtttcagaagaaacaaccgttaattatgtttgtgagttaaaaattgatggcaatgccctc
gctttaacttatgaaaatggtattttagtccgtggggtgacccgtggtgatggagaaaca
ggagaagaaattactaataatgtgcgaaccattcggacaattcccttacgattagattta
gaaaatccgccagcacgagtggaagtgagaggagaggcgtttcttccccggaaaaccttt
gaaaaaattaatcaagcccgcagtgaaaacggagaagcccgatttgcgaatccacgaaat
gcgacatcgggaacattacgacaacttgatccgaaagtggtggcaaaacgtcaacttgat
ttttttgcttataccctttatgtaatcgatgaaaacacaacgattaatcccaaaacgcaa
gcggaatctttagagagtttgcaggaaatgggatttcaggtgaatccgaatcataaaatt
tgtcagtccttaaaacaagtcggggactattatcagaaatggcaagaagaacgagaaaaa
ctcccttatgaaaccgatggcgtggtcattaaaattaattcttatgcgctacaagagaaa
ctgggatttactcagaaattccctcgttgggcgatcgcgctgaagtttcccgccgaagaa
gccccaacgaagctcaaagaaattacagttaatgtgggacgcactggcgcagtcactcct
ttggctcatcttgaacccgtttctttagcgggaacaacggtgcaacgggcaaccctccac
aatactgattttatcaatgaattggatgtcagaatcggcgatacggttgtggtacgcaaa
gcaggggatatcattcctgagattgtccgcgtgttaccagaattacgcccagagtccgcg
cagcctttcataatgcctaccgaatgccccgagtgcgggtcgcgattagtacgcccagaa
ggggaagcagtgacccgttgcgtgaatgtttcttgtcctgctatcttacggggcagtctc
gtccattttgcctctcgggatgccatggatattaatggactgggagagaaaatggtggaa
aatctcgtcagtcaaggtctggtgacatcagttgccgatttatatcacttaaccgttgag
caattgacccaattggaacgagtggggaaacaatcggctagtaatttagtgagcgcgatc
gcgcaatccaaacatcaaccttggtcacgggtgttatatggtttaggcatccgctatgtg
gggaaagtgaatgcagaaaccttaactgagcgtttttccaccgtggaggagttagcaagg
gcgagtgtggaagacttaaaagcagtggaagggattggggaagaaattgcgcgatcggtg
tatcagtggtttagaatcgaagccaatcaagccctagttaaacaattacaagagacggga
ctcaatttccaagccgaagcgacagaaacgccccccgcagaaacaacaattgctcaacct
tttgcagggaaaaagtttgttttaacgggaaaactcaaacacttgactcggagtgaagcc
caacaacttattgaacgcgctgggggaaaagtcagttcctcggttagttccaaaaccgat
tacgttttagtgggtgacaaaggcggatcgaaacaaaagaaagctcaagaactgaatatt
cctcaaatgacagaagatgagtttcaagcacgaacaatgggcttataa
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