Natranaeroarchaeum sulfidigenes: AArcS_0116
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Entry
AArcS_0116 CDS
T07875
Symbol
lig
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hara
Natranaeroarchaeum sulfidigenes
Pathway
hara03030
DNA replication
hara03410
Base excision repair
hara03420
Nucleotide excision repair
hara03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hara00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AArcS_0116 (lig)
03410 Base excision repair
AArcS_0116 (lig)
03420 Nucleotide excision repair
AArcS_0116 (lig)
03430 Mismatch repair
AArcS_0116 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hara03032
]
AArcS_0116 (lig)
03400 DNA repair and recombination proteins [BR:
hara03400
]
AArcS_0116 (lig)
Enzymes [BR:
hara01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AArcS_0116 (lig)
DNA replication proteins [BR:
hara03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AArcS_0116 (lig)
DNA repair and recombination proteins [BR:
hara03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AArcS_0116 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AArcS_0116 (lig)
MMR (mismatch excision repair)
DNA ligase
AArcS_0116 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AArcS_0116 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
HHH
5_3_exonuc
Nlig-Ia
DMP19
PTCB-BRCT
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QSG01356
UniProt:
A0A897MT26
LinkDB
All DBs
Position
complement(106467..108527)
Genome browser
AA seq
686 aa
AA seq
DB search
MPPESTENPYVEEPPTEFEPVESLDETEAREQADLLREAIRYHDRRYYRKADPVISDRVY
DALFARLETLEDRFDIDSADSPTQRVGGEPVDEFETVDHVAPMLSIDSTEDADEVRNFAD
RIEREFDGVSYVCEPKFDGISIEVVYEDGQLVRGVTRGDGREGDDVTANVRTIRSIPLQL
SGDYPEFLAVRGEIYMPRDAFQAYNRELVERGEDPFANPRNATAGTIRQHDPTVVAERPL
DCFFFEVLDASREWESRYAEDETLPEFGLRVNEHTTRVDDIEAAISYRDDILDQRDDLNY
EIDGVVIKVDGRAEREALGSTARHYRWAIAYKFPARTEETTVRDIAVQVGRTGRLTPVAL
LDPVDVGGVTVARASLHNPDEIARLGVDIGDGVRIERAGDVIPQVAEVLDDGDGHFEFPD
SCPVCESAIERDGPMAHCTGGIACDAQLRESLVYYGSDPGLDIDGLGERTIRQLLDTGLI
ERLPDLYRLDADELAGLEGWGERSARNLIEAIEATEEPPLADFLSALGVPHVGPATAREL
AREFGDLDSLMGASVDELESVDEVGDVVAGEIHDFFASEANRAVIEELRNEGVEPQSAEM
SGGDELAGLTIVFTGSLDEYTRSEAQELVEAHGGSATGSVSGNTDYLVTGENPGATKVED
AEAEDVERLDEDEFEALLADRGIDPT
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgccgccagagtctacggagaacccgtacgtcgaggagccgccgacggagttcgagccg
gtggaatcgctcgacgagaccgaggcccgtgaacaggcggatctcctccgggaagcgatc
cgatatcacgaccgtcggtactaccgaaaggcggacccagttatttccgacagagtctac
gacgccctgtttgcccgcctcgaaacgcttgaagaccggttcgatatcgacagtgctgac
agcccgacccagcgggtgggcggcgagccggtcgacgaattcgaaaccgtcgatcacgtc
gcgccgatgctctcgatcgatagcaccgaggacgccgacgaagtgcgtaactttgccgac
cggatcgagcgcgagttcgacggcgtgagctacgtctgtgagccgaagtttgacggtatc
tcgatcgaggtcgtctacgaggacggccagctcgtgcgtggagtcacccgcggtgacggt
cgcgagggtgacgacgtgaccgcaaacgtccggacgatccggtcgatcccgctccagctc
tcgggagactatccggagtttctggccgtgcggggcgagatctacatgccacgggacgcg
tttcaggcgtacaaccgcgagctggtcgaacgcggcgaagacccctttgcgaacccgcgg
aacgcgacagctgggacgatccgtcagcacgacccaaccgtggtcgccgagcgcccgctg
gactgtttctttttcgaggtgctcgacgcgagccgtgagtgggagagccgctacgccgag
gacgagacgctgccggagttcggcctgcgcgtcaacgaacacaccacccgcgtcgacgac
atcgaggccgcaatttcgtaccgcgacgacatcctcgaccagcgggacgacctgaactac
gagatcgacggtgtggtgatcaaagtcgacggccgggccgagcgcgaggctctcgggtcg
accgcccgacactatcggtgggcgatcgcctacaagttccccgcacgcaccgaggagacg
acggtccgcgatatcgcggtgcaagtggggcgaaccggccgcctgacgccagtcgcactg
ctcgatcccgtcgacgtcggtggggttactgtcgcgcgcgccagcctgcacaaccccgat
gagatcgcgcgtctcggcgtcgacattggcgacggagttcgcatcgagcgggcgggcgac
gtgatcccacaggtcgccgaggtcctcgacgacggcgacggccacttcgagtttcccgac
agctgtcccgtctgtgagagcgcgatcgagcgggacggcccgatggcccactgtactgga
gggatcgcctgtgacgcccagctacgggagtcgctggtctactacgggagcgaccccgga
ctcgatatcgacggactgggtgaacggacgatccgccagctgctcgatacggggctgatc
gagcggctgccggatctctaccggctcgacgccgacgaactggccgggctggagggctgg
ggcgagcggagtgcgcggaacctgatcgaggcgatcgaggcgaccgaagaacccccgctc
gctgacttcctctcggcactcggtgtcccacacgtcggcccggcgaccgcccgcgagctg
gcccgcgagttcggcgacctcgacagcctgatgggagcgagcgtcgacgagttagaatcg
gtcgacgaggtgggcgacgtcgtcgccggagagatccacgacttcttcgcctcggaggca
aacagggcagtaatcgaggagctgcgaaatgagggcgtcgagccacagtccgccgagatg
tccggcggcgacgagctagccggactgacgatcgtcttcaccgggagtctggacgagtat
acgcgaagcgaggcacaggaactcgtcgaggcgcacggtggctcggcgacgggaagcgtc
tccggtaacaccgactatctcgtgactggcgagaaccccggcgcgacgaaggtcgaagac
gccgaagcggaggatgtcgaacggctcgatgaggacgagttcgaggcgctactggctgat
cgtgggatcgacccgacctag
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