Halioxenophilus aromaticivorans: R50071_26920
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Entry
R50071_26920 CDS
T10756
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
haro Halioxenophilus aromaticivorans
Pathway
haro03030
DNA replication
haro03410
Base excision repair
haro03420
Nucleotide excision repair
haro03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
haro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
R50071_26920 (ligA)
03410 Base excision repair
R50071_26920 (ligA)
03420 Nucleotide excision repair
R50071_26920 (ligA)
03430 Mismatch repair
R50071_26920 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
haro03032
]
R50071_26920 (ligA)
03400 DNA repair and recombination proteins [BR:
haro03400
]
R50071_26920 (ligA)
Enzymes [BR:
haro01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
R50071_26920 (ligA)
DNA replication proteins [BR:
haro03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
R50071_26920 (ligA)
DNA repair and recombination proteins [BR:
haro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
R50071_26920 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
R50071_26920 (ligA)
MMR (mismatch excision repair)
DNA ligase
R50071_26920 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
R50071_26920 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
zf-C2H2_ZFAND2
DZR_2
Motif
Other DBs
NCBI-ProteinID:
BFM07488
LinkDB
All DBs
Position
complement(3094750..3096777)
Genome browser
AA seq
675 aa
AA seq
DB search
MDKSAIAQRVEMLRTTLDQYSYQYYVMDDPSVPDAQYDKLFQELKQLEQDHPEFVSPESP
TQRVGAAPLSAFDSVQHRMPMLSLDNAFSDQDLLDFDRRIKERLKIDDTVEYACEPKLDG
IAVSLMYEHGILIRGATRGDGQTGEDITQNVRTIKSIPLKLRGEAIPELLEVRGEIYMLK
QGFDAINEQARAEGGKVFVNPRNAAAGSLRVLDSNITATRPLEMCAYSVGVVEGGTLPNT
HTRVLEQLNQWGFRINRYMASAQGAQECIDYHSKLGEQRDYLPYDIDGIVFKVNSLELQQ
QLGFVSRAPRWAIAYKFPAQEQMTVLKGVEFQVGRTGAVTPVARLEPVFVGGVTVSNATL
HNRDEIERLGVMVGDSVVIRRAGDVIPQVVSVVAEKRPKNAAEILFPASCPVCDSPVETT
PGEAVARCTGGLVCPAQRKESIKHYASRKAMDIEGLGDKLVEALVDKGLIKSVEDLYGLT
TDDVAGLERMGAKSAQNLVTAIERSKQTTLAKLIYSLGIREVGEATSRSLEAALGTLDAL
ITADEESLQSIPDIGPVVAHFIAEWFAQKDHLALVAALKDAGVTWSESEPKQPEELPLAG
LTYVVTGSLESYSRDEAKAHLQSLGAKVAGSVSKKTHCVVAGPGAGSKLTKAQDLGVEVI
DEEQFIAFLKQHGIG
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atggataaatctgccatcgcacaacgtgttgagatgctgcgcacgacgctggatcagtac
agctatcaatattatgtgatggacgacccaagtgtgcccgatgcgcagtacgacaaactc
tttcaagagctgaagcaactagagcaggatcacccagaattcgtctcacctgaatcgccc
actcaaagagtaggggcagcgccgttatcagccttcgacagcgtgcagcaccgtatgccc
atgttgtccttggacaacgccttcagcgaccaggatttactggattttgaccgccgaata
aaagagcgtttaaagatcgacgatacggttgagtacgcctgtgagcccaagctagatgga
attgccgtgagtttgatgtatgagcacggcattttgatcaggggggcaacccgaggcgat
ggccaaaccggcgaagacatcactcaaaatgtgagaaccattaagtctattccgcttaaa
ttacgcggcgaagcaatccctgagttgctggaagtgcggggcgaaatttacatgctcaag
caaggctttgatgcgatcaatgaacaagcccgcgccgagggcggtaaagtatttgtcaat
ccgcgtaacgccgcagccggcagcctgcgagttctcgacagtaacattaccgcaactcgc
ccgttggaaatgtgtgcctacagcgttggcgttgtggaaggcggcacgcttcccaacacc
cacactcgcgtactggaacaactcaaccaatggggttttcgtatcaatcgatacatggcg
tcggcccaaggtgcgcaggagtgtattgactaccacagtaaattgggtgagcagcgtgat
tatttgccctacgacatcgacggtatcgtttttaaggtcaactccctagaactgcagcaa
cagttgggttttgtctctagggcgccgcgatgggctatcgcctataaattcccagcccaa
gagcaaatgacggtgctcaaaggcgttgaattccaagtcggcagaaccggcgcggtaacc
cctgtggctaggcttgaaccggtattcgtgggtggcgttacagtgtccaacgcaaccttg
cacaatcgagatgaaatagaacggttgggcgttatggttggcgatagcgtagtgattcgt
cgggccggcgacgtcatcccccaagtcgtttccgtggtagctgaaaagcgacccaaaaac
gccgcagaaattcttttcccggccagttgcccggtgtgtgactcaccggtagaaaccacg
ccgggtgaggccgttgcgcgctgcaccggcggtctggtttgccccgcccaacgcaaagaa
tccattaagcactacgcgtctcgcaaagccatggatatcgaaggcctcggtgataaattg
gtcgaggcattggttgataaaggcctgattaaaagcgttgaagacctctatgggttgacc
accgatgatgttgcgggcttagagcgcatgggtgcaaaatccgcgcagaatttagtaacc
gccatcgaacgcagtaaacaaaccaccctggctaaattaatttattcgctgggcatccga
gaggtgggggaggctacttcgcgcagtttggaagccgcattgggcaccctagatgcgctg
atcacggcggatgaagaaagcttgcaatctattcccgacatcggcccggtggtggcacat
tttatcgctgaatggttcgcgcaaaaggatcaccttgcgttggtggctgccttaaaagac
gccggcgttacctggagtgaatccgagcccaaacagcccgaagaattacccttggctgga
ttaacctatgtggttactggctcattggaatcttacagccgcgatgaagcaaaggcgcat
ttacaatccttgggtgccaaggtggcgggcagtgtttcaaagaaaacacattgtgttgtg
gccggccctggtgcgggttcaaaactcaccaaagctcaagatttgggcgttgaggtcatt
gatgaagagcaatttattgcttttcttaagcaacacggtatcggctag
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integrated database retrieval system
