Halanaerobium hydrogeniformans: Halsa_1835
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Entry
Halsa_1835 CDS
T01349
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
has
Halanaerobium hydrogeniformans
Pathway
has03030
DNA replication
has03410
Base excision repair
has03420
Nucleotide excision repair
has03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
has00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Halsa_1835
03410 Base excision repair
Halsa_1835
03420 Nucleotide excision repair
Halsa_1835
03430 Mismatch repair
Halsa_1835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
has03032
]
Halsa_1835
03400 DNA repair and recombination proteins [BR:
has03400
]
Halsa_1835
Enzymes [BR:
has01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Halsa_1835
DNA replication proteins [BR:
has03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Halsa_1835
DNA repair and recombination proteins [BR:
has03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Halsa_1835
NER (nucleotide excision repair)
GGR (global genome repair) factors
Halsa_1835
MMR (mismatch excision repair)
DNA ligase
Halsa_1835
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Halsa_1835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH
PTSIIA_gutA
DUF724
RNA_lig_T4_1
DUF6891
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
ADQ15253
UniProt:
E4RJ33
LinkDB
All DBs
Position
complement(2038008..2040020)
Genome browser
AA seq
670 aa
AA seq
DB search
MNNLNKEKAKKKIKALREKIRKAEYRYFVLDDPQISDAEFDKLMQDLLKLESQFPELVTA
DSPTQRVGGEVLDEFEKVEHSTEMLSLDNSFNAEELRGFDQRVKKNTTERDYQYIVEHKI
DGLSAVIRYQGGSFQLGATRGNGEVGENITENMKTIRSLPLKIEDKAELELRGEIYLSKS
EFERINEKRLENEKKPFANPRNAAAGSVRQLDSKIAASRRLSILIYDLISHSNREFETHL
EVFAYLEEQGFNVNWHKKADDIGKVIEICQEWEEKRESLDFEIDGLVVKINNLNLREELG
STARSPRWAIAYKFPAQQKTTRVKSIEISLGRTGALTPTAVLEPVEIAGSTVSRATLHNE
DEIKRKDIRIGDIVLVQKAGDVIPEVVKVIKEKRDGCEKEFEMPDHCPVCGTKVKRPEGE
AVTRCTNISCPAQRKEKILHFVSRDAMNIEGVGPALVDQLLENDLIDDYGDLYFLKKHHL
QNLERMGEKSSQNVIDAIKQSKDREFFRVIYALGIRHVGLGAARTLSDNYSSISQLMEAS
NEELEEIDEIGPVIADSIIDFFAEKQNRDLISRLRQAGINLSRENTEEKEKFLEGLKFVF
TGSLNDFTRSEVKDLVEKAGGRSVSSVSSKTDYLVIGDNPGSKYQKAQELGIKILSESEF
KELLENKEEK
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
gtgaataatttaaataaagaaaaggctaaaaagaaaataaaagctttaagagaaaaaatc
agaaaagcagaatatagatattttgttttagatgatcctcaaatatctgatgcagaattt
gataaattgatgcaggatttattgaaattagaaagccaattcccagaattagtaacagct
gattctccaactcagagagttggtggagaagttttagatgagtttgaaaaagttgaacat
tcaactgaaatgctgagtctagataattcatttaatgctgaggaattaagaggttttgac
caacgggttaaaaaaaatacaactgaaagagattatcaatatattgtagaacataaaatt
gatggcctctctgctgtaataagatatcaaggaggaagctttcagttaggagctactaga
ggtaatggagaagttggagaaaatattactgaaaacatgaaaacaatccgctccttacca
cttaaaattgaagataaagcagaacttgaattaaggggtgaaatttatttaagcaaaagt
gaatttgagagaattaatgaaaaaagattagaaaatgaaaaaaaacctttcgctaatcct
cgtaatgcagcagcaggttctgttcgacagcttgatagtaagattgctgcttcgagacgt
ttatcaattttaatttatgatttgatatctcattcaaatagagagtttgaaacccatctt
gaagtatttgcttatttagaggaacagggttttaatgttaactggcataaaaaagcagat
gatatcggaaaagtgattgaaatttgtcaggaatgggaagagaaaagagagagtcttgat
tttgaaattgatgggcttgtggtaaaaataaataatttaaatctaagagaagaacttggc
tctactgcaagaagtcctcgctgggctatagcttataaatttcctgctcaacaaaaaact
actagagttaaatccattgaaatatctttaggaagaacaggagctttaactcctactgca
gttttagaaccggtggaaatagctggttcaactgttagcagagctactctacacaatgag
gatgaaatcaaaagaaaagatatacgaatcggagatattgtacttgtacaaaaggcagga
gatgttattccagaagttgttaaagttattaaagaaaaacgtgacggttgtgaaaaggaa
tttgaaatgcctgatcattgtccggtttgtggtactaaagtaaaacggcctgagggggag
gcggtaacccgctgtacaaatattagctgtcctgctcagcgcaaagaaaaaattcttcat
ttcgtttctcgtgatgcaatgaatatagagggtgttgggcctgcattagttgatcagtta
ttagaaaatgatttaattgatgattatggagatttatattttcttaaaaaacatcatctt
caaaatttagagaggatgggagaaaaatcttctcaaaatgtcattgatgctattaagcaa
agtaaagacagagaattttttagggttatttatgccctgggaattcgtcatgttggttta
ggagcagctagaaccttaagtgataattacagttctatatctcaattgatggaggcctct
aatgaggaactggaagagattgatgaaattggccctgttattgcagatagtattattgat
ttttttgcagaaaaacaaaatcgtgatttaataagccgtttaagacaggcaggtataaac
cttagccgggaaaatactgaagaaaaagaaaaatttcttgagggattaaaatttgttttt
accggctcattaaatgactttacccgttcagaggttaaggacctggtcgaaaaagcagga
ggaagatccgtgtcttctgttagttctaaaacagattatttagttataggagataacccg
ggctcaaagtaccaaaaagcccaggaattaggaataaaaatattatcagaatcagaattc
aaagaactattagaaaataaggaggaaaaataa
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