Halomonas sp. 'Soap Lake #7': B2G49_12775
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Entry
B2G49_12775 CDS
T09182
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
haso
Halomonas sp. 'Soap Lake #7'
Pathway
haso03030
DNA replication
haso03410
Base excision repair
haso03420
Nucleotide excision repair
haso03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
haso00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
B2G49_12775 (ligA)
03410 Base excision repair
B2G49_12775 (ligA)
03420 Nucleotide excision repair
B2G49_12775 (ligA)
03430 Mismatch repair
B2G49_12775 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
haso03032
]
B2G49_12775 (ligA)
03400 DNA repair and recombination proteins [BR:
haso03400
]
B2G49_12775 (ligA)
Enzymes [BR:
haso01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
B2G49_12775 (ligA)
DNA replication proteins [BR:
haso03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
B2G49_12775 (ligA)
DNA repair and recombination proteins [BR:
haso03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
B2G49_12775 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
B2G49_12775 (ligA)
MMR (mismatch excision repair)
DNA ligase
B2G49_12775 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
B2G49_12775 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
DUF4796_N
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
AQU83368
LinkDB
All DBs
Position
complement(2792760..2794793)
Genome browser
AA seq
677 aa
AA seq
DB search
MSQPESTLREEISQLRDDLNDANYRYYVLDEPTLTDADYDRKLRRLQQLETEHPTQVSPD
SPTQRVGAAPAEGFPEVAHAIPMLSLDNAFSREDILAFAERIAERLECQAAEIEFSCEPK
LDGAAVSLVYEQGVLVSGATRGDGRTGEGITSNLRTLRSVPLKLVGKSVPELLEVRGEVI
MRHSGFEALNERARSEGSKVFANPRNAAAGSLRQLDPRITATRPLEFHAYQAARLEPDLG
DVTHSALMARLSALGFRTSAELCTVRGPEAVAEFCEQLGEKRDQLGYDIDGVVIKVNDLR
HQRELGFVARAPRWAVAFKFPAQEEVTTLNDVEFQVGRTGAITPVARLEPVTVAGVTVSN
ATLHNADEITRLGVMIGDTVAIRRAGDVIPQVVRVDTDKRPADARAINFPDHCPVCGSDI
ERLEGEVVARCSGGLYCAAQRKEALKHFASRKALDVDGLGEKLIEQLVDQDWVKTPADLF
RLSVEQLQSLPRMGIKSATNLVNALDKAKQTTLARFIYALGIREVGEATAANVASHFGTL
QALQNAEQVALEAVNDVGPIVATHIHTFFRQPHNLETLQALLEAGITWQESEVTQGPTPL
EGQTWVLTGSLDTMTRDEGKARLQALGAKVAGSVSKKTTCLVAGEAAGSKLTKAEQLGVE
VIDEATFIERLAAWEQS
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagcctgagtcaacactgcgggaagagattagccaactgcgcgatgatctgaat
gatgcgaattaccgctactatgtattagatgaaccaacgctgactgatgcagattacgac
cgcaaactgcggcgtttacagcagttggagaccgaacatcccacccaggtatcgccagat
tcaccaactcaaagagtaggagccgcaccggcggaaggttttccagaagttgcccatgcg
atcccgatgctctcgttggataacgcctttagtcgcgaagatatcctcgcgtttgctgag
cgaatagccgaacgcttggagtgtcaggcagcagagatagagtttagctgcgagccaaag
cttgatggtgcggcggtatcgttggtatatgagcagggcgtactggtcagcggtgctacc
cgtggtgatggccgtaccggggaaggcattacctcaaacttgcgcactctacgttcggtg
ccgctaaagttagtaggcaagagtgtacctgagctattggaagtccgtggcgaggtgatt
atgcgccactcaggctttgaggcacttaacgagcgtgccaggagcgaaggtagcaaggta
tttgctaacccacgtaacgctgccgctggcagcctgcggcagctcgacccgcgtattact
gctacccgtccactggagtttcatgcctaccaggccgcgcggcttgagcctgatttaggg
gatgtaactcatagtgcgctaatggcgcggctatccgcactggggtttcgaaccagcgct
gagctttgtactgtgcgtggtcctgaagctgtagcggaattctgtgagcagttaggcgaa
aaacgtgatcagttaggctatgacatcgatggcgtggtgattaaggtgaacgaccttcgc
caccaacgtgagctgggctttgtggcccgagcgccgcgctgggcagtggcgtttaaattt
cccgcccaggaagaggtcaccacgcttaatgatgtggagttccaggtgggccgtacgggg
gccattacgccagtcgcgcggctagagccagtgaccgtggcaggtgtgacggtgtccaat
gctacgctacacaatgccgatgaaatcacccggctaggcgttatgattggcgatacggta
gccattcgccgcgctggtgatgtcatacctcaagtagtgcgagtggataccgataaacgc
cccgcagatgcacgggcaattaacttccccgatcactgccctgtatgcggctcggacatt
gagcgcctggagggtgaggtcgtagcccgctgttctggtgggctttactgcgctgcgcag
cgtaaagaggccctaaagcactttgccagccgtaaggcacttgatgttgacggactgggt
gaaaagctaattgaacagttggtggatcaagactgggtaaaaacgcctgctgatctcttt
cgcctaagtgttgagcaactgcaaagcttgccgcgaatgggcataaagtcagccactaat
ctagtcaatgcattagacaaagccaaacaaacgactctggctcggtttatttatgccctg
ggtattcgtgaggtaggtgaggctacggcagctaatgtcgccagccactttggtactttg
caagcgttacaaaacgctgagcaagtggcgttagaagcggtgaacgatgtggggcctatt
gtcgcgacgcatatccatacctttttccgtcagccccataaccttgaaactctgcaagca
ctgctggaggctggcatcacttggcaagagagtgaggtcacccaaggtccaacacccctt
gaagggcaaacatgggtgctaacaggctcgctggacaccatgactcgcgatgaaggtaag
gcgcgtctgcaggcgttaggggccaaagtggcgggcagcgtttccaaaaagacaacctgc
ttagtggcaggggaggccgcgggaagcaagttaaccaaagccgagcagttgggtgtggaa
gttatcgacgaagcgacttttattgagcgtttagctgcctgggagcagagttaa
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