Falsihalocynthiibacter arcticus: RC74_17210
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Entry
RC74_17210 CDS
T04275
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hat
Falsihalocynthiibacter arcticus
Pathway
hat03030
DNA replication
hat03410
Base excision repair
hat03420
Nucleotide excision repair
hat03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RC74_17210
03410 Base excision repair
RC74_17210
03420 Nucleotide excision repair
RC74_17210
03430 Mismatch repair
RC74_17210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hat03032
]
RC74_17210
03400 DNA repair and recombination proteins [BR:
hat03400
]
RC74_17210
Enzymes [BR:
hat01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RC74_17210
DNA replication proteins [BR:
hat03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RC74_17210
DNA repair and recombination proteins [BR:
hat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RC74_17210
NER (nucleotide excision repair)
GGR (global genome repair) factors
RC74_17210
MMR (mismatch excision repair)
DNA ligase
RC74_17210
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RC74_17210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
CagY_I
CoV_NSP13_ZBD
Motif
Other DBs
NCBI-ProteinID:
AML52767
UniProt:
A0A126V3N8
LinkDB
All DBs
Position
complement(3504585..3506702)
Genome browser
AA seq
705 aa
AA seq
DB search
MEQKKPQDMTESEAQIELVRLAKILSKANSDYHGLDAPTLSDAEYDALKRRNSEIEARFP
ALRHFDSPSEKIGAPAESGFGKITHTIRMLSLGNAFEEPDVEDFDARIRKFLGYSTTEAL
EFTAEPKIDGLSLSLRYEDGQLVHAATRGDGSIGENVTENARTISDIPQELFNAPSILEV
RGEVYMSHQDFQNLNERQIANGEKTFANPRNAAAGSLRQLDSKITKGRPLKFFAYAWGEL
SEPLAETQFNAISRLKAFGFSVNDLTEICQGPQELLAHYKSIEQSRASLGYDIDGVVYKV
NLLTLQKRLGFRSTTPRWAIAHKFPAELAWTRLEKIEIQVGRTGALSPVARLSPVTVGGV
VVSNATLHNEDYIQGRGNKGELIRDGKDIREGDWVQVYRAGDVIPKISDVDLSKRPVDSQ
PFVFPEVCEVCQSPAIREEGDAVRRCTGGIICAAQVVEKLKHFVSRSAFDIEGLGAKQIE
LFYKDGWIESPADIFTLRERYENGLNQLKNREGWGGKSAANLFDAIDAKRQIPLAKLIFS
LGIRHVGESSGVLLANHYQSWSKFVVGLTSVTVGGGDAWEDLLSIDGVGVVMATSLVAAF
QNPRERVAIDALISQLTPLDAVFKEMESSPVVGKIVVFTGTLEKMSRAEAKARAEDLGAK
VSGSVSKKTDLLVAGPGAGSKAKKAEDLGIEVIDEDAWLAMIEGL
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atggaacagaaaaaaccacaagacatgaccgaatctgaagcgcagatcgaactcgtgcgt
cttgctaaaatattgtcgaaggccaattctgactatcatggcctagacgcgcccaccttg
tcggatgcagagtatgacgctctcaaacgccgaaacagcgagatagaagctcgatttccc
gctttaaggcacttcgatagcccaagtgagaaaattggagcccctgcggaatccgggttt
ggcaaaatcacccatacaattcgaatgctctctcttggaaatgcgtttgaggagcccgat
gtcgaagactttgatgcgcgtattcgaaagtttctgggctattctacgaccgaggcattg
gaatttactgctgagcccaaaattgatggcctgtcgctttcgctacggtatgaagacggt
caactcgtacatgctgcgacgcgtggggacggctcaattggtgagaatgttaccgaaaac
gcgcgaacgatatctgatatcccacaagaactattcaacgcgccctctatccttgaggtt
cgcggtgaagtgtacatgtctcatcaagactttcagaacttgaatgaacgccagattgca
aacggagaaaaaacctttgccaatccgcgcaacgctgccgctggttcccttcgtcaactg
gattcaaagatcaccaaaggccgaccgttaaagttttttgcctatgcgtggggagagctt
tcagagccactggcagaaacgcaattcaatgcgatttcgcgtttaaaagcatttggcttt
tcagtaaacgatctgacggaaatatgtcaggggccacaagagcttttggctcattacaaa
tctatcgagcagtcccgagcctcgcttggttatgatattgacggcgtcgtgtataaagtg
aacctcctgactttgcaaaaacgattgggatttcgaagcacaacgcctcgctgggcgatc
gcacataagttccctgccgaacttgcttggacacgcctcgaaaaaattgaaatccaagtc
ggaagaacaggggcgctttctcccgtggcaaggctttcgccggttaccgttggcggcgtt
gtggtgagtaacgcgactcttcacaatgaggactatattcaggggcgtggaaacaaaggt
gaattaattcgagacggcaaagatatccgtgaaggtgactgggtccaagtctatcgtgcg
ggcgacgttattccaaaaatttcggacgtagatttatccaaaaggcctgttgatagccaa
ccgtttgttttcccagaagtttgtgaagtttgtcagtctccggccatccgagaagagggc
gatgctgttcgtagatgcaccggtgggattatttgtgccgcacaagtcgttgaaaagtta
aagcattttgtttcccggtctgcattcgatatcgaggggctcggggccaaacaaattgag
ctgttttacaaagatggatggatagaaagccccgctgatatttttaccctgcgcgaaaga
tacgaaaatggcctgaatcagcttaaaaaccgagagggttggggaggtaaatcagccgct
aacttgtttgatgcaatagatgcaaagcgccagattcccctcgcgaagcttattttttcc
ctcggaattaggcatgtcggtgaaagttcaggtgtacttttagctaatcattatcagtcg
tggtctaaatttgtagtgggcctcacatctgtgaccgttggcggtggcgacgcttgggaa
gatcttttgtcaattgatggcgttggagttgtcatggcaacgtctctcgtggccgcattt
caaaacccgcgagaacgcgttgcaattgacgcactcatctcccaattaacacccttggat
gcggtattcaaagagatggaaagtagtcccgtggttggaaaaatagttgtattcacaggg
actttggagaagatgagtcgcgcagaagccaaggcgcgcgctgaagatcttggagcaaaa
gtttctggaagcgtgtccaaaaaaactgatttgcttgttgccggcccaggcgccggatcc
aaagcgaagaaagctgaagacctaggaatagaagtcattgatgaagatgcatggctggcc
atgatcgaagggctatga
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