Helicoverpa armigera (cotton bollworm): 110376758
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Entry
110376758 CDS
T05609
Name
(RefSeq) TAR DNA-binding protein 43
KO
K23600
TAR DNA-binding protein 43
Organism
haw
Helicoverpa armigera (cotton bollworm)
Pathway
haw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
haw00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110376758
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
haw03019
]
110376758
Messenger RNA biogenesis [BR:
haw03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
110376758
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TDP-43_N
RRM_1
RRM_PARP14_3
RRM_7
Nup35_RRM_2
PTP_N
Motif
Other DBs
NCBI-GeneID:
110376758
NCBI-ProteinID:
XP_063890971
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All DBs
Position
5:complement(5708533..5709897)
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AA seq
454 aa
AA seq
DB search
MCSKSGNYNGDLFEYIKVSEDEDESNAVEIPCELDGTLLLSTLVAQFPGACGLKYRHPDS
KSIRGIRLSDGKLHPPSEVGWGKHLYICVFPKENKRKMEDVSPENSAAKTKRLEKKLTCS
DLICLGLPWKSTEESIKQYFEQFGEVVMVQLKRDKNGSFKGFGFIRFATYASQMRALAQR
HNIDGRWVDVRIPNSKEGVVPQMPCKVFVGRCTEDMTADDLREYFSKFGEVTDVFVPRPF
RAFGFVTFLDPEVAQSLCGEDHVIKGASVSVSSAAPKIKTKSQNWKDDSYGPNNWEGNRS
GGPSGGPSNNGGNSNIDSLNMQNLGINPNGGPPANFNLPISLVAAALNQAGWGGFLGGPG
NSGPNNWQGGPPQGNPGKNWNGNQNWGQNGPPQSWNQGGGSGGNQGWNGGGKSGGNWNQG
SWPNGQGNWNGNGNGGGGSSSGSGSGWNNNKPQT
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgtgttccaagagtggcaactacaatggtgacttgttcgagtatatcaaagttagtgaa
gatgaagatgaatctaatgcggttgaaattccttgcgaattagatggtacactgttgctt
tcaactctcgtagcccaatttcccggggcttgtggactgaaatatcgacacccggatagc
aaatcaatccgagggattcgtctaagtgatggcaaactacatccacccagtgaagtaggt
tggggtaaacacctgtacatttgtgtatttcctaaagagaacaaacgtaaaatggaagat
gtttctccagagaattctgctgctaagaccaaacgcttagagaagaaactgacatgctca
gatttaatttgtttaggattgccctggaagtcaacagaagagtccattaagcagtatttc
gagcaatttggtgaagttgtaatggtgcaattgaaaagagataagaatggctcctttaaa
ggttttggttttattcgttttgctacttatgcatcccagatgagagctttagcccagagg
cataacattgatggccgctgggtagatgttcgtattcctaattcaaaagaaggcgtagtg
cctcagatgccctgcaaagtatttgttggaaggtgtactgaagatatgacagctgatgat
ttacgagaatatttctcaaagttcggagaagtaactgatgtgtttgttccacgtccattt
agagcatttggatttgttacatttttggatccagaagtagcacaaagtctttgtggagaa
gatcatgttataaagggagcttctgtatctgtatcaagtgcagcacccaaaattaagacc
aagtcccaaaactggaaagatgattcctatgggccgaataattgggagggcaaccgttca
gggggaccatctggtggcccaagcaacaatggcggaaatagtaacattgattctcttaac
atgcagaacttaggaatcaaccctaatggaggtccaccagctaacttcaatttacctata
agtttagtagctgcagcacttaaccaagcaggatggggtggatttttaggaggccctggt
aactctggtcccaataattggcaaggtggcccaccacaaggcaaccctgggaaaaactgg
aatggtaatcaaaattggggtcaaaatggaccaccacaatcatggaatcagggtggtggt
agtggtggcaaccaaggttggaatggtggtggcaaaagtggaggcaactggaatcaaggc
agttggccaaatggccagggcaactggaatggtaatggcaatgggggaggtggctccagt
tctggctctggaagtgggtggaacaacaacaagccccaaacatga
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