Halomonas sp. XH26: J4377_03800
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Entry
J4377_03800 CDS
T10290
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
haxh Halomonas sp. XH26
Pathway
haxh03030
DNA replication
haxh03410
Base excision repair
haxh03420
Nucleotide excision repair
haxh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
haxh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
J4377_03800 (ligA)
03410 Base excision repair
J4377_03800 (ligA)
03420 Nucleotide excision repair
J4377_03800 (ligA)
03430 Mismatch repair
J4377_03800 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
haxh03032
]
J4377_03800 (ligA)
03400 DNA repair and recombination proteins [BR:
haxh03400
]
J4377_03800 (ligA)
Enzymes [BR:
haxh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
J4377_03800 (ligA)
DNA replication proteins [BR:
haxh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
J4377_03800 (ligA)
DNA repair and recombination proteins [BR:
haxh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
J4377_03800 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
J4377_03800 (ligA)
MMR (mismatch excision repair)
DNA ligase
J4377_03800 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
J4377_03800 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
5_3_exonuc
DUF4796_N
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
UTA80615
LinkDB
All DBs
Position
822553..824616
Genome browser
AA seq
687 aa
AA seq
DB search
MSQPEKKLLEEISQLRADLDDANYRYYILDEPKLTDADYDRKLQRLKQLESEYPDLVSPD
SPTQRVGAAPAEGFPEVAHAIPMLSLDNAFSRDDITAFAERVAERLECQASSVEFSCEPK
LDGAAVSLVYEQGVLVSGATRGDGRTGEGITSNLRTLRSVPLKLMGDNIPALLEVRGEVI
MRHAGFEALNDRAREEGSKVFANPRNAAAGSLRQLDPRVTATRPLEFHAYQVARLDMTNL
GDGALSSSPMTTHSQQMARLKAWGFRSSTELRTVNGPELVADYCEQLGEKRDQLGYDIDG
VVIKVNDLRHQRELGFVARAPRWAVAFKFPAQEEVTTLNDVEFQVGRTGAITPVARLEPV
TVAGVTVSNATLHNADEITRLGVMIGDTVAIRRAGDVIPQVVRVDIDKRPAQARVITFPE
HCPVCGSDIERLEGEAVARCSGGLYCAAQRKEALKHFASRKALDVDGLGEKLIEQLVDLD
WVKTPADLFHLTAEQLQTLPRMGEKSSTNLVNALDKAKHTTLARFIYALGIREVGEATAA
NLASYFGTLQALQEADQAALEAVNDVGPIVAAHVHTFFRQPHNLATLKALLDAGITWQES
EVTQGPTPLEGQTWVLTGTMDTMTRDEGKARLQALGAKVAGSVSKKTTCLVAGEAAGSKL
TKAEQLGVEVIDEATFIERLAAWEQSE
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagcctgagaaaaaacttctggaagagattagccaactgcgcgccgatcttgat
gatgcaaactaccgctactatatattagatgagcctaagctgaccgacgcagattacgac
cgcaaactgcagcggttgaagcaattggagtccgaataccccgatttagtctcaccggat
tcccctacccagcgggtaggggccgcgccagcggaagggttccctgaagttgctcatgcg
attcccatgctctccttggataacgcatttagccgtgatgatattaccgcctttgctgag
cgtgtcgctgaacgtttggagtgtcaggcgagtagcgttgagtttagctgtgagccaaag
ctcgacggtgctgcagtctctttagtgtacgagcagggcgtattggttagtggcgcaacc
cgtggcgatggccgtaccggagaaggcattacatcgaatttgcgcaccttgcggtctgtt
ccgttaaagctaatgggcgacaacattccagcgttattagaagtacgcggcgaagtcatt
atgcgccacgcgggctttgaagcgctcaatgatcgagctagagaagaaggcagcaaggta
tttgctaacccgcgtaatgcggcggctggcagcctacgacagctcgatccgcgggttacc
gcaacgcgcccattagagtttcatgcttatcaagttgcccggctcgatatgacgaacctt
ggcgacggcgcacttagcagtagcccaatgacaactcatagtcagcaaatggcaaggctc
aaagcatggggctttcgctcaagcacggagcttcgaactgtcaatggccctgagctggtg
gctgattactgcgagcaattgggtgaaaagcgagaccaattgggttacgacatcgatggc
gtcgtgattaaagtaaacgatctgcgccaccagcgagagcttggctttgtggcacgggcg
ccacgctgggcggtagcatttaaatttcctgctcaggaagaagtcacgacccttaacgat
gtagagtttcaggtaggccgtactggcgcgattaccccagttgctaggctagagcctgtc
accgttgctggtgtgacggtatcaaacgctacgctgcataacgcagatgagatcacccgc
ttaggtgtgatgattggtgatacggtggccattcgtcgggcaggcgacgtgattccccaa
gtggtacgagtggatatcgacaagcgtcctgcccaggcgcgcgtgattacctttcccgag
cactgcccggtgtgtggttcggatattgaacggctggaaggcgaggcggtcgctcgttgc
tcaggcgggctttattgtgccgcgcagcgtaaagaggcgctgaagcatttcgccagccgt
aaagcgctagatgtcgatgggctgggtgagaagctgattgagcagttggtggacctggac
tgggtgaaaacgccagcagacttatttcatctcacagctgagcagcttcagacgctgcca
cgcatgggggaaaagtcctcgaccaacttggtaaatgccctggataaggctaagcacacc
acgttggctcgttttatttacgccttgggtattcgcgaagtaggcgaagccacagcggca
aatttagccagctacttcggtacacttcaggccttgcaagaagctgatcaagcggcgctg
gaagcggtgaatgatgttggtccgattgtcgccgcccatgttcacacttttttccgtcaa
ccccataatctggcaacgctgaaagcactgcttgatgctggcatcacgtggcaagagagt
gaagtgacgcaaggcccgacgcccttagagggacagacctgggtgcttaccggcacgatg
gacaccatgacccgcgatgaaggtaaggcgcggctgcaagcgctaggcgctaaagtggcg
ggtagtgtttccaagaaaaccacctgcttggtagcgggcgaggccgcaggcagtaaatta
accaaagcagagcaactgggcgttgaagtgatcgatgaagccacctttattgagcgtcta
gctgcctgggagcagagtgaatga
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