Halorussus salilacus: NGM10_09875
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Entry
NGM10_09875 CDS
T09338
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hayc
Halorussus salilacus
Pathway
hayc03030
DNA replication
hayc03410
Base excision repair
hayc03420
Nucleotide excision repair
hayc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hayc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NGM10_09875 (ligA)
03410 Base excision repair
NGM10_09875 (ligA)
03420 Nucleotide excision repair
NGM10_09875 (ligA)
03430 Mismatch repair
NGM10_09875 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hayc03032
]
NGM10_09875 (ligA)
03400 DNA repair and recombination proteins [BR:
hayc03400
]
NGM10_09875 (ligA)
Enzymes [BR:
hayc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NGM10_09875 (ligA)
DNA replication proteins [BR:
hayc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NGM10_09875 (ligA)
DNA repair and recombination proteins [BR:
hayc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NGM10_09875 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NGM10_09875 (ligA)
MMR (mismatch excision repair)
DNA ligase
NGM10_09875 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NGM10_09875 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
HHH
5_3_exonuc
DNA_ligase_ZBD
HHH_3
HHH_8
RNA_ligase
Nlig-Ia
PTCB-BRCT
BRCT_2
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
USZ67037
LinkDB
All DBs
Position
1913218..1915332
Genome browser
AA seq
704 aa
AA seq
DB search
MPAATPDENPYVEDPPTEFEPIERLSEAEADEQAELLREAIRYHDHRYYVESDPVIADRT
YDALFTRLRDLEDAFDVETPDSPTRRVGGEPLDELGTVEHVAPMLSIDSSGDADDAREFA
RRMEREVGEHVEYVCEPKFDGLSVEVVYEDGEYVRAATRGDGHTGEDVTENVRTIGSVPH
RLRGEYPDFLAVRGEVYMPEEAFREHNSERVERGEDPFANPRNAAAGSLRQLDPGVTAER
PLDVFFFDVLEVRRTAGESSDESDDSLAPAREFDTHWEQHETLPEWGLKVNDRSERTDDI
EDAIAYRDRLMDERADLDYEIDGVVIKVNDLDACERLGTTERAYRWAFAYKFPARAEVTT
ITDIVVQVGRTGRLTPVALLEPVDVGGVTVSRASLHNPEEIAEMDVNVGDEVRVERAGDV
IPYVAEVVEKHAEGHYEFPDRCPVCDSPVEFDGPIAYCTGGLACDAQLRRAVEYYASDDG
LDIEGLGGERVDQLIEAGLVTDSLADLYDLPGREDELADLDGWGETSAQNLLNELEASKR
PRLREFLSAIGIPKVGPATAADLAREFGSVDAIRTADREQLEAVEGVGPKVAAQIAEFFD
SEQNEQVIDDLLDAVGPLETPEEDETGDELAGLTFVFTGALDGYTRDEAQELVERHGGNA
TSSVSGNTDYLVVGEGAGQTKLDDAEEHGVETLDEKAFEALLAE
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgccagcggcgaccccggacgagaatccctacgtcgaggacccgccgacggagttcgaa
ccaatagagcgactgtcggaggccgaggccgacgaacaggccgaactgctccgtgaggcc
atccggtaccacgaccaccgctactacgtcgagagcgacccggtaatcgccgaccggacc
tacgacgccctctttacccggctgcgggacctcgaagacgccttcgacgtggagacgccc
gacagtccgacgcgacgggtcggcggcgaacccctcgacgaactcgggacggtcgaacac
gtcgcgccgatgctctccatcgattcgagcggcgacgccgacgacgcccgggagttcgcc
cggcggatggagcgagaagtgggtgagcacgtcgagtacgtctgcgaacccaagttcgac
ggcctctcggtcgaagtggtctacgaggacggcgagtacgtccgggccgccacgcgcggg
gacggccacacgggcgaggacgtgaccgagaacgtccggaccatcgggagcgtcccccac
cgactccggggcgagtaccccgacttcctcgcggtccggggcgaggtgtacatgcccgag
gaggccttccgcgagcacaacagcgagcgcgtcgagcgcggcgaggaccccttcgcgaat
ccccggaacgcggccgcggggagcctccgccaactggaccccggcgtgaccgccgagcgg
ccgctcgacgtgttcttcttcgacgtgctcgaagtccgtcgaaccgcaggcgagtcgtcg
gacgagtccgacgactcgctcgccccagcgcgggagttcgacacccactgggagcaacac
gagactctgcccgagtggggcctgaaggtcaacgaccggtcggagcgcaccgacgacatc
gaggacgccatcgcgtaccgggaccgcctgatggacgagcgggccgacctcgactacgag
atagacggcgtcgtcatcaaggtgaacgacctcgacgcctgcgagcgactcgggaccaca
gagcgcgcctaccggtgggcgttcgcctacaaattccccgctcgcgccgaggtcacgacc
atcacggacatcgtggtgcaggtgggccggaccggccgcctgacgccggtcgccctgctc
gaacccgtggacgtgggcggggtcaccgtctcgcgcgccagcctccacaaccccgaggag
atcgccgagatggacgtgaacgtcggcgacgaggtccgggtcgagcgcgcgggcgatgtc
atcccctacgtcgcggaggtcgtcgagaagcacgccgagggccactacgagttccccgac
cggtgtccggtctgtgacagtccggtcgagttcgacggccccatcgcctactgcaccggg
gggctggcctgcgacgcccagctccggcgcgccgtcgagtactacgccagcgacgacggc
ctcgacatcgagggcctgggcggcgagcgcgtcgaccagcttatcgaggccggactcgtc
accgacagcctcgccgacctctacgacctcccggggagggaagacgaactcgccgacctc
gacgggtggggcgagaccagtgcgcagaacctcctcaacgaactggaggcgtccaagcgc
ccccggctccgggagttcctctcggccatcggcatcccgaaggtcggccccgccaccgcc
gccgacctcgctcgcgagttcgggagcgtcgatgcgattcggaccgccgaccgcgagcaa
ctggaggccgtcgagggcgtcggcccgaaagtcgccgcccagatcgcggagttcttcgac
tccgagcagaacgagcaggtcatcgacgacctgctcgacgcggtcgggcccctcgaaacc
cccgaggaggacgagacgggcgacgaactggcggggctgaccttcgtgttcaccggcgca
ctcgacggctacacccgcgacgaggcccaagagctggtcgagcgccacgggggcaacgcc
acgagtagcgtctcgggcaacaccgactacctcgtggtcggcgagggcgcggggcagacg
aagttggacgacgccgaggaacacggcgtcgagacgctggacgagaaggcgttcgaggcg
cttctggccgagtga
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