Halomonas binhaiensis: E4T21_17020
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Entry
E4T21_17020 CDS
T08791
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hbh
Halomonas binhaiensis
Pathway
hbh03030
DNA replication
hbh03410
Base excision repair
hbh03420
Nucleotide excision repair
hbh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hbh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E4T21_17020 (ligA)
03410 Base excision repair
E4T21_17020 (ligA)
03420 Nucleotide excision repair
E4T21_17020 (ligA)
03430 Mismatch repair
E4T21_17020 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hbh03032
]
E4T21_17020 (ligA)
03400 DNA repair and recombination proteins [BR:
hbh03400
]
E4T21_17020 (ligA)
Enzymes [BR:
hbh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
E4T21_17020 (ligA)
DNA replication proteins [BR:
hbh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
E4T21_17020 (ligA)
DNA repair and recombination proteins [BR:
hbh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
E4T21_17020 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
E4T21_17020 (ligA)
MMR (mismatch excision repair)
DNA ligase
E4T21_17020 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
E4T21_17020 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
Prok-E2_C
HTH_91
DZR_2
Motif
Other DBs
NCBI-ProteinID:
QEM83056
UniProt:
A0A5C1NIA8
LinkDB
All DBs
Position
complement(3886401..3888470)
Genome browser
AA seq
689 aa
AA seq
DB search
MTTDASILDETSRLRAELNDANYRYYVLDDPLLTDAEYDRRLRRLQELEDKHPELVTADS
PTQRVGAQPADGFPQITHAIPMLSLDNAFSDDELRAFVERVAERLEVDPESLVFSCEPKL
DGAAVSLVYENGTLVSGATRGDGRTGEGILSNLKTLRSIPLQLRGENVPALVEARGEVIM
SHAGFEAMNERAREQDGKVFANPRNAAAGSLRQLDPKMTATRPLEFSGYQLARLEPQAGD
ETHSQLMQRLASLGIPVSRELKVVKGAKGVIDYCHRLGERRDGLGYDIDGAVIKVDDLRL
QRELGFVARAPRWAIAFKFPAQEQTTRLNDVEFQVGRTGAITPVARLEPVNVAGVTVSNA
TLHNADEIERLGVMIGDTVAIRRAGDVIPQVVRVIEGERPADACPIVFPARCPVCDSEIE
RVEGEAVARCSGGLYCAAQRKEALKHFASRRAMDIDGLGVKLIDVLVDREMVMTPADLFL
LPAEQLADLPRMAEKSANNLVAALDKARGTTLARFVFALGIREVGEATAANLAAHFGTLE
ALMQAGRETLEQVNDVGPIVAAHVATFFQQEHNIETIRALIEAGVHWDETVIEQRATPLE
GQTWVLTGTLESMTRDEGKARLQALGAKVAGSVSKKTSCLVAGPGAGSKLTKAEQAGVPV
IDEDTFLVRLAEWEAMPAGDEEDDGVSDA
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccgacgcttcgatcctcgacgaaaccagccggctgcgcgccgaactcaatgac
gccaattaccgttactatgtgctcgatgatccgctgctgaccgatgccgagtacgatcgt
cgtctgcgtcgcctgcaggaactcgaggataagcatcctgagctggtgacagcggattca
cctacgcaaagggttggcgcccagcctgccgatggttttcctcagataacccatgccatt
cccatgttgtcgcttgacaatgcgttcagtgatgatgagctgcgtgcctttgtcgaacgt
gtggcggagcgactggaagtcgatcctgaatccctggtgttcagctgtgagcccaagctc
gatggagcagcggtgtctctggtctacgaaaatgggacgctggtcagtggggcgacgcga
ggagatgggcgtactggagagggcatcctgtccaatttgaagacgctgcgttccattccc
ttgcagttacgtggcgagaatgtgcctgccctggttgaagccaggggcgaagtcatcatg
agccacgcgggcttcgaggccatgaacgaacgtgctcgagagcaggatggcaaagtcttc
gccaatccccgtaatgctgctgccgggagcctgcgtcagctcgacccgaagatgacggcg
acccgtccgctggagttttccggctatcaacttgcccgccttgagcctcaggctggtgat
gaaacacatagccaactgatgcagcgcctggcatcgcttggtattccggtcagtcgcgaa
ctgaaagtggtaaaaggggccaagggtgtcatcgactattgccatcgtcttggtgagcgc
cgtgatgggcttggttacgatatcgatggtgcggtgatcaaggttgatgatctgcgcctg
caacgggaactgggttttgtcgcacgggcgccgcgctgggccattgccttcaagtttcca
gcccaggagcagaccacgcggctcaatgatgtggaatttcaggtcggccgtaccggtgcc
attactccggtggcacgcctggaacctgtcaacgtggcaggtgtgacagtatccaatgca
accttgcacaatgctgacgagattgaacgtctcggagtgatgattggcgacaccgttgcc
atccgccgggctggcgatgtcattccccaggttgtgcgggtgatcgagggtgagcgtccg
gcagatgcatgccccatcgtatttcctgcccgttgccccgtgtgtgactcggaaatcgag
cgtgtcgagggtgaagcggtagcgcgctgctcaggtggcctgtattgcgcagcccaacgc
aaggaggcgctcaagcatttcgccagccggcgtgccatggatatcgatgggcttggggtc
aagctgatcgatgtgctggtcgaccgagagatggtaatgacgcctgcagacctgttcctc
ctccctgctgaacaactggccgatttaccgcgcatggccgagaagtctgccaataatctg
gtggcagcattggacaaggcgcgtggcacgacgttggcgcgctttgtctttgctctgggg
attcgtgaggtgggcgaagccacagcagctaaccttgcagctcacttcggtactctggag
gcgctcatgcaagccgggcgtgagacattggagcaggtcaatgatgtaggaccgatcgtg
gcggcccatgtggcgacgttctttcaacaagagcacaacatcgagacgatcagggccctg
atcgaagcgggcgtgcactgggatgaaaccgtgatcgagcaaagggccacgcccctggaa
ggccagacttgggtgctgactggcacactggaaagcatgactcgggacgaaggcaaggcg
aggcttcaggcgttgggtgccaaggtcgccggtagcgtatcgaagaaaaccagttgcctg
gttgccggtcccggagcgggcagcaagctgaccaaggccgagcaggcgggcgtacccgtc
attgacgaggatacgtttcttgtccgccttgccgagtgggaagccatgccagctggggac
gaagaagatgatggagtgagtgacgcatga
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