Helicobacter bizzozeronii: HBZC1_14470
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Entry
HBZC1_14470 CDS
T01540
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hbi
Helicobacter bizzozeronii
Pathway
hbi03030
DNA replication
hbi03410
Base excision repair
hbi03420
Nucleotide excision repair
hbi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hbi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HBZC1_14470
03410 Base excision repair
HBZC1_14470
03420 Nucleotide excision repair
HBZC1_14470
03430 Mismatch repair
HBZC1_14470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hbi03032
]
HBZC1_14470
03400 DNA repair and recombination proteins [BR:
hbi03400
]
HBZC1_14470
Enzymes [BR:
hbi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HBZC1_14470
DNA replication proteins [BR:
hbi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HBZC1_14470
DNA repair and recombination proteins [BR:
hbi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HBZC1_14470
NER (nucleotide excision repair)
GGR (global genome repair) factors
HBZC1_14470
MMR (mismatch excision repair)
DNA ligase
HBZC1_14470
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HBZC1_14470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
HHH_5
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
CCB80433
UniProt:
F8KU89
LinkDB
All DBs
Position
1341007..1342476
Genome browser
AA seq
489 aa
AA seq
DB search
MGRLVLKKSDFFALNKQRLEQQEPLFANARNAAVGSLRQLDSSIAAKRKLSFLPWGLGRH
ADPSNPSFKAMMDQVVSWGFLDLEFVACQNVGQIQQAYNQLLAKRAQAPFEMDGMVIVVD
DWGLQEELGWTIKAPRFAIAYKFPALEKHTRLLGVLPQVGRSGVVTPVALLEPIELEGAT
ISRATLHNYTEVQKKGICLNDVVVVVRSGDVIPKIIKPLTHLRDGTQTPITPPTHCPECQ
NELVSQEPFLICTHAACPARIKKSLVYFASKEGLEIEGLAQKSIDQLYQKGLLPNIASLY
DLKLEDLLALPGWKHKKAQNLIEGIANTKHAPLWRLINALGIEHIGKAASQKLAQTFGLE
VFLQSVEQIQALEGFGSQMASAFVDFAHQNASLIQELLERIQPQAPKVALTTASFLSGKN
VVITGTLSQPRAQVASRLEQLGAHIQTGVSQTTDYLICGENPGSKLEKAHKLGIEILDEA
SLLEKLGAL
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
gtggggaggctggtgcttaaaaagagcgatttttttgccctcaacaagcaacgcctagaa
caacaagagcccctatttgctaacgctagaaatgccgctgtggggagcttacgccaatta
gactccagcattgcggctaaacgcaaactcagctttttaccttggggattagggcggcat
gctgaccctagcaaccctagttttaaggcgatgatggatcaagtggttagctggggtttt
ttggatttggaatttgtcgcttgccaaaatgtggggcaaatccaacaagcctataatcag
ttattagccaagcgcgcccaagccccctttgagatggatgggatggtgattgtagttgat
gattggggcttacaagaagaattgggctggacgatcaaagccccccgctttgcaatcgcc
tacaagttccccgccctagagaaacacacccgcttattgggggtattgccacaagtgggg
cgtagcggggtggtaacgcccgtagcgctcttagagcctatagaattggagggcgcgacc
atttctagggccactttacacaattacaccgaagtgcaaaaaaagggcatttgcttaaat
gatgtcgtggtggtggtcaggagcggagatgtgatccccaagatcatcaagcccttaacc
cacttgcgtgatggcacacaaacccccatcaccccccccacgcattgcccagaatgccaa
aatgagttggtcagccaagaaccttttttgatctgcacgcacgctgcttgcccggcacgg
attaaaaaaagccttgtttattttgcctctaaagaaggcttagagatagagggcttggca
caaaaaagcatcgatcagctctaccaaaagggcttactccccaacatcgccagcctttac
gatctcaaattagaagatttactagccctacccggctggaaacacaaaaaagcccaaaat
ctcatagagggcattgctaacaccaagcacgccccgctgtggcgtttgatcaatgcgcta
ggaatcgagcatatcggcaaggcagccagccaaaaattagcccaaacttttggattagag
gttttcttacagagtgtggagcaaatccaagcactcgagggttttgggagtcaaatggca
agcgcatttgtggattttgcccaccaaaacgcctctttgatccaagaactcttagagcgt
atccagccccaagcccctaaagttgcgctaaccacggcttcttttttaagtggcaaaaat
gtcgtgatcacgggcactttaagccagcctagagcacaagtggctagccgcctagagcaa
ctcggggcgcatatccaaacaggggtgagccaaacaacagattatctaatttgcggggaa
aaccccgggagcaagctagaaaaggcgcataagctagggattgaaatcctagatgaggct
agcttgctagaaaaactaggcgcgctctag
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